2723 days ago
Worldwide funding agencies to fund your bioinformatics research !!
Are you seeking funding for research or training in a particular area? Check out the following agencies ... National Science Foundation: For the love of science...2947 days ago
Tools for Searching Repeats And Palindromic Sequences
What are genomic interspersed repeats? In the mid 1960's scientis...into five categories: Simple Repeats - Duplications of simple set...such as A, CA, CGG etc.Tandem Repeats - Typically found at the cen...in the formation of inverted repeats. Assisted by high speed comp...2221 days ago
Genome Assembly Tools and Software - PART1 !!
...is designed for constructing repeats directly from sequence reads...le virus genomes that have no repeat sequences, using Illumina rea...mes in terms of expected gene content. FinisherSC 2.0 – A Repeat-aware tool for upgrading de-no...2695 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks,...ack/webgui - A free open source content management system and web app...ubclasses for various tasks. memowe/contenticious - A simple file ba...flickr, simpy, boingboing, wired for content that matches the given patter...2499 days ago
2360 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late...ng of single-cell RNA-Seq data http://biorxiv.org/content/early/2016/09/02/036558 Citr...ingle cell sequencing analysis http://biorxiv.org/content/early/2016/09/14/045070 Sing...2360 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynamic...problems. These distributions run the gamut from full-blown web frameworks and content management systems to APIs fo...2331 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best....fferent than with ordinary mapping. If a genome (say, human) contains an exact repeat...2324 days ago
PerlOneLiner for Bioinformatician
FILE SPACING------------ # Double space a fileperl -pe '$\="\n"'perl -pe 'BEGIN { $\="...specific lengthperl -le 'print "a"x50' # Create a repeated list of elementsperl -le '@...-ne 'print if $. % 2 == 0' # Print all lines that repeatp...2312 days ago