Results for "repeats"
Users
Skills: Repeats1138 days ago
Blogs
List of motif discovery tools !
...- Polyglutamine Database Find information about polyglutamine (polyQ) repeats. Pratt Protein motif and...ics tools at this portal site. T-REKS -- identification of Tandem REpeats in sequences with a K-meanS b...1991 days ago
Understanding reads mapping and flags !
...ds but not a representative reads. Primary Alignment and Secondary Alignment: A read may map ambiguously to multiple locations, e.g. due to repeats. Only one of the multipl...1835 days ago
- +2 more Blogs
Bookmarks
- ...allow smaller eukaryotic and prokaryotic genome projects to independently annotate their genomes and to create genome databases. MAKER identifies repeats, aligns ESTs and proteins to...
3008 days ago
YASS :: genomic similarity search tool
...e transition constrained spaced seeds that enable to search more fuzzy repeats, as non-coding DNA/RNA. Anoth...ckground frequencies parameterizable output filter for low complexity repeats reporting of various alignme...2923 days ago
- +16 more Bookmarks
Files
Bioinformatics approach to Boar Taint
...nal list of SNPs was prepared after filtering SNPs on the basis of SNP quality, coverage of SNP allele, functional and structural annotation, and repeats, etc. Selected SNPs will be g...3788 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...embler, that explicitly identifies exact kmer repeats from the shotgun data and rem...ocalizing the assembly reduces the numbers of repeats in the assembly, allows more...angles is an ultimate tool for resolving repeats in genome assemblies. Arachn...2684 days ago
Top-level pages
Commercial and public next-gen-seq (NGS) software
...m next-generation sequencing machines (specifically that of Solexa/Illumina) back to a genome of any size. It seeks to align reads from nonunique repeats using statistics. From author...3517 days ago
Software packages for next gen sequence analysis
...m next-generation sequencing machines (specifically that of Solexa/Illumina) back to a genome of any size. It seeks to align reads from nonunique repeats using statistics. From author...3241 days ago
- +9 more Top-level pages
Wire posts
News
- ...fore comparing to the reference genome, to account for simple sequence repeats that are a regular source of...and creates a de Bruijn graph to span the exon; however, if it detects repeats in the map, it iteratively in...
3545 days ago
Opportunity posts
JRF @ NATIONAL JALMA INSTITUTE OF LEPROSY AND OTHER MYCOBACTERIAL DISEASES
...ttendant in a ICMR funded project entitled "Elucidating the strain differentiation and transmission dynamics of M. leprae through simple sequence repeats ISSR-PCR marker" 1. JRF (o...3840 days ago
Bio-Scripts
Perl script to delete the adjacent repeats !
/usr/bin/perl #Mostly the interview question for bioinfomatician ! #Write a code to delete the adjacent repeated character .... $string='ATTTTTTGGC'; # This sho...1549 days ago
Perl script to find inverted repeats !
#!/usr/bin/perl use strict; use warnings; use Bio::SeqIO; use Bio::Tools::Run::RepeatMasker; my $genome_file = "genome.fasta"; # read genome sequence my...423 days ago
- +3 more Bio-Scripts
Tags
- A Computational biologist, currently investigating the impact of transposable elements on the adaptation of the rice genome under fungal pathogen challenges and genome duplication. Experienced in using next-generation sequencing technologies like shotgun sequencing, linked reads, and long-read se...
Skills: Programming (Python, Linux, Bash, R), Computational Biology, NGS technologies, WGS, RNA Seq, Repeats, Variant Calling
1138 days ago
Comments
Comment on "Genome in a Bottle (GIAB) Consortium"
...sed on establishing benchmark large indel and structural variant calls, as well as calls in difficult genomic contexts (e.g., homopolymers/tandem repeats and difficult-to-map regions...1558 days ago
