Results for "samples"
Blogs
Bioinformatics PhDs - Cover Letter
...de a sentence where you list the materials you have enclosed (e.g., CV, dissertation abstract, transcripts, teaching statement/portfolio, writing samples, etc.) and are having sent se...3381 days ago
Computer simulation of genetic mechanism !!
...esting and investigating methods in statistical genetics by generating samples of family data based on user...cts/mason/ mbs modifying Hudson's ms software to generate samples of DNA sequences with a biall...2990 days ago
- +9 more Blogs
Bookmarks
- ..., by using parallel computing frameworks like MapReduce. Explore data by slicing alignments and variants by genomic range across one or multiple samples -- for your own algorithms or...
3503 days ago
- ...cy and more. Process big genomic data easily. Run batch analyses like principal component analysis and Hardy-Weinberg equilibrium on as many samples as you like, in minutes or ho...
3441 days ago
- +53 more Bookmarks
Files
Bioinformatics approach to Boar Taint
...ale pigs with reduced boar taint levels. Resequencing of a total of 47 samples belong to Norwegian Landrace...iSeq2000 to >10X average coverage. Short reads generated from these samples mapped to Sus Scrofa&nbs...3804 days ago
Pages
Awesome perl frameworks, libraries and software - PART 4
...onal tools nothingmuch/class-mop - Mirror of Class-MOP.git mjollnir/sf2debpkg - Symfony2 Debian Packaging miyagawa/plack-dispatching-samples - Examples of Plack disp...2509 days ago
Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
...methods in statistical genetics by generating samples of family data based on user...bs modifying Hudson's ms software to generate samples of DNA sequences with a biall...rward-time simulator that simulates realistic samples for genome-wide association s...3752 days ago
List of In-silico Binding Site Prediction Tools
...high clearance pathways or corridors which represent molecular channels in the complement space of proteins. It is extremely efficient because it samples the medial axis of the comple...3759 days ago
- +6 more Top-level pages
Wire posts
News
Lateral Gene Transfer Is Enriched in Cancer Samples
There has been always a confusion on cancer and bacteria relationship. This is the first paper which shows lateral gene transfer causes cancer. Find more at http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.10031073955 days ago
Make Genomic Research Less Ethnically-Biased
...lion to a genomics center in Boston in order to right a bias in the field–a kind of scientific racism, you might call it. The problem: most samples of DNA analyzed in biomedical...3854 days ago
- +10 more News
Opportunity posts
- ...nce, Desirable: Experience of working in a Life Science/Plant Biotechnology lab. and familiarity with computers and field work viz. collection of samples. The applications through...
3407 days ago
- ..., Desirable: Experience of working in a Life Science/Plant Biotechnology lab. and familiarity with computers and field work viz. collection of samples. The applications through...
3212 days ago
- +5 more Opportunity posts
Bio-Scripts
- ...tionary keys in sample_links. extract them to a list we can use below SAMPLES=sample_links.keys() # down...: input: expand("rnaseq/raw_data/{sample}.fq.gz", sample=SAMPLES) # rule to download each i...
1531 days ago
- ...mines the baseline contig ploidy for germline samples given counts data Germli...Tool) Calls copy-number variants in germline samples given their counts and the ou...erless BAM shard into a readable BAM DownsampleSam (Picard)...
2090 days ago
- +2 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...metabolite profiles between normal tissue, normal tissue adjoined to the tumor (reactive stroma), tumor tissue, lymph node metastasis, and blood samples taken from the same patient a...2377 days ago
Groups
Metabolomics is the comprehensive and quantitative analysis of multiple metabolites in biological samples. Metabolome is the complete set of small-molecule metabolites found within...3720 days ago
Metagenomics is the study of genetic material from environmental samples to characterize and identify the millions of microbes from these samples. Example: Gut microbiome, so...3718 days ago
Tags
- cisMuton is a caller that detects SNVs/indels by comparing target (foreground) and control (background) samples. cisMuton calls mutations from target capture regions, which are defined by the overlapping regions of ${GROUP}.target.bed and ${GROUP}.gene.bed. Please read the Q...
Tags: caller, detects, SNVs, indels, comparing, target, foreground, control, background, samples
1560 days ago
GEO2R: compare two or more groups of Samples
GEO2R to compare two or more groups of Samples in order to identify genes that are differentially expressed across experimental conditions.Tags: GEO2R, compare, groups, Samples, identify, genes, differentially, expressed, across, experimental, conditions
1247 days ago
Comments
Comment on "Calling variants in non-diploid systems"
FreeBayes is widely used for calling variants in diploid systems. However, it can also be used for calling variants in pooled samples where the number of samples is not known. This is the exact sce...1058 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...38 under each genome at ftp://ftp-trace.ncbi.nlm.nih.gov/ReferenceSamples/giab/release/ Draft benchmar...al duplications). GIAB is also exploring expanding to additional samples consented for release of WGS...1575 days ago
- +10 more Comments
