1053 days ago
Palindrome Simulation commands !
.../Tools/art_bin_MountRainier/art_illumina -ss MSv3 -sam -i allPalindromeSimulated.fa -p -l 250 -f 100 -m 300 -s 10 -o paired_dat 3321 ~/Tools/seqtk/seqtk mergepe paired_dat1.fq paired...1734 days ago
849 days ago
2126 days ago
1724 days ago
1401 days ago
get GC across the entire CDS !
#look at GC across the entire CDS. gffread -x - -g | \ seqtk comp - | \ awk -v OFS="\t" '{ print $1, "0", $2, ($4 + $5) / $2 }'1392 days ago
1214 days ago
Installing Covid19 Environment !
...######################################################################################################################################### | 100% seqtk-1.3 | 38 KB |...922 days ago
Bash script to simulate a genome !
...conda activate bcftools1.10.2 # Use Seqtk to convert soft-masked bases...compress with bgzip # https://github.com/lh3/seqtk /genetics/elbers/bin/seqtk/s...upper.diploid.fasta.gz|\ /genetics/elbers/bin/seqtk/seqtk seq -L0|paste - - |grep...917 days ago