Results for "sequence analysis"
Top-level pages
Quick next generation sequencing (NGS) terms definition
fragment size: the Illumina WGS protocol generates paired-end reads from both ends of longer fragments. The len...Note that, by definition, the discordant read pairs signal potential SVs. The sequence...2533 days ago
Awesome perl frameworks, libraries and software - PART 1
A curated list of awesome Perl frameworks, libraries and so...tilities for Next-Generation Sequencing (NGS) data analysis masukomi/jsonpath-perl ...dern Perl Framework for High Throughput Sequencing analysis gbarr/perl-libnet - per...2500 days ago
Phylogenetic & Molecular Genetics Terms and Definitions
...m, resulting from a cladistic analysis, which depicts a hypothetical branching sequence of lineages leading to the ta...haracters used in a cladistic analysis, either original or derived....her clade. repetitive DNA -- Sequences of DNA that are found to be...2473 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...ly with error-containing long sequence (e.g., ONT or PacBio reads, d...ing SNPs (based on k-mer analysis) Software (C) https://sourc...GS reads using alignment-free sequence dissimilarity measures d2* an...omic assignment in metagenome analysis by exact k-mer search; L...2382 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in...e useful links: Single Cell RNAseq data analysis Tutorial A step-by-step workflow for low-level analysis of single-cell RNA-seq data...on and evaluation in single-cell RNA-seq analysis https://github.com/zji90/TSC...2362 days ago
- ...f applications, but no single analysis pipeline can be used in all c...e major steps in RNA-seq data analysis, including experimental desig...ernative splicing, functional analysis, gene fusion detection and eQ...ene and transcript expression analysis of RNA-seq experiments with T...
2362 days ago
Tools for bacterial whole genome annotation
...detailed annotation and pathway analysis. Takes several hours per geno...functional profiling and pathway analysis of your genome(s)… whi...and inverted repeats, insertion sequences, transposons and other mobil...Assigns K numbers to the user's sequence data by BLAST searches, respe...2343 days ago
- There are several ways you can convert fastq to fasta sequences. Some methods are listed below...e of every 4 lines, you get the sequence header and sequence needed fo...fastq-fasta conversion seqret -sequence reads.fastq -outseq reads.fas.... [-r] = Rename sequence...
2316 days ago
List of visualization tools for network biology
...om/articles/sections/networks-analysis. Following are the list of...icient integrated multi-level analysis of microarray, sequence, regulatory and other data h...Igraph Collection of network analysis tools with the emphasis on ef...Automatic reconstruction and analysis of biological networks and Pe...2299 days ago
List of visualization tools for genome alignments
...ls, which could be useful for analysis and interpretation of re...d representation to display a sequence assembly and associated metad...that allows visualization of sequence features, next-generation seq...of similar regions in two DNA sequences. The resulting alignments ar...2295 days ago
