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Comment on "Basic command-line to run BLAST"
...ases. Choose the database that is most appropriate for your search. Set the parameters: BLAST has man...Perform the search: Once the query sequence and parameters have been set, the BLAST search can be run....431 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...r (existing) conda env conda activate envname # cpanm is available on either conda-forge or # bioconda, so add conda-forge (or look up # how to set up bioconda if you need tools...1189 days ago
Comment on "Sibelia: A comparative genomics tool"
...format. The "far" parameters set can be used for analysis of d...= "." You can change this by setting cmd parameter: -o <...ritten. To output this file, set cmd parameter: -q or --se...-------- Default value = not set. To specify the file that con...1292 days ago
Comment on "Mugsy: multiple whole genome alignment tool"
Set up the environment bash source /path/to/install/mugsyenv.sh Run mugsy...ign three genomes and output a file /data/output/mygenomes.maf. The --directory setting is also used for storing...1293 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...modules: KAT/2.1.1 and gnuplot/4.6.5) – we can plot the kmer content of the assembly compared to the kmer content of the read set. The first thing we need to d...1344 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
International Journal of Bioinformatics Research and Applications Indexed in Scopus (Elsevier) Academic OneFile (Gale) ACM Digital Library Current Awareness in Biological Sciences (Elsevier) Chemical Abstracts (CAS)1371 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
#To install perl modules perl -MCPAN -e shell # go to CPAN install modeinstall Bundle::CPAN # update CPANreload cpaninstall Set::Scalar1389 days ago
Comment on "Setting up autoConTAMPR !"
Setting up mafft (7.123-1) ...Setting up maq (0.7.1-5) ...Setting up muscle (1:3.8.31-1) .....: Dialogdebconf: (TERM is not set, so the dialog frontend is no...: Dialogdebconf: (TERM is not set, so the dialog frontend is no...man-db (2.6.7.1-1ubuntu1) ...Setting up libclass-methodmaker-p...1449 days ago
- ...nbsp; Set colour for features captured...nbsp; Set how annotation features shoul...
1528 days ago
Comment on "Biological databases !"
NCBI released a set of GATK-specific dbSNP VCF's, with the "chr" attached. Those can be accessed at ftp://ftp.ncbi.nlm.nih.gov/snp/organisms/human_9606/VCF/GATK/.1551 days ago
