How to install Perl modules manually, using CPAN command, and other quick ways
...he default values by pressing enter.Note: Make sure to execute “o conf commit” in the cpan prompt after the configuration to save the settings.# cpanSorry, we have to rerun...3964 days ago
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mrFAST: Micro Read Fast Alignment Search Tool
...d error threshold, including indels up to 4+4 bp. This manual, describes how to choose the parameters and tune mrFAST with respect to the library settings. mrFAST is designed to find&n...2945 days ago
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Awesome perl frameworks, libraries and software - PART 3
...implement all modern features of IRC, including those of many recently-defined specifications. wertarbyte/hetzner-rdns - update reverse DNS settings for systems hosted at Hetzner...2508 days ago
3956 days ago
List of generic simulation software/tools/resource with brief description and homepage !!!
....umich.edu/csg/liang/genome/GenomePop2 GenomePop2 is a specialization of the program GenomePop just to manage SNPs under more flexible and useful settings. If you need models with more...3751 days ago
4273π: Bioinformatics education on low cost ARM hardware
Are you teaching bioinformatics at universities and found it complicated by typical computer classroom settings. As well as running software locally and online, students should gain ex...3912 days ago
3735 days ago
Complex Systems: From Physics to Biology October 15-16 2013 at JNU Convention Center
The symposium intents to focus on complex systems arising in a variety of settings in physics and biology. In particular, applications of the concepts of physics to biological sciences...3891 days ago
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A multilayer perceptron (MLP) neural network in Perl
...a input in the training data #and set to 1 ################ User settings ######### my $numEpochs = 50...my $LR_IH = 0.7; my $LR_HO = 0.07; ################ Data dependent settings ######### my $numInputs = 3;...2930 days ago
BASH script for SelfBLAST a genome
...ve blast and samtools installed in your system #Author: Jitendra Narayan #USAGE: ./selfBlast.sh extract #USAGE: ./selfBlast.sh all #Common settings FASTAFILE=MergedContigs.fas...2666 days ago
BLAST options, setting and defaults
BLAST stands for Basic Local Alignment Search Tool and was developed by Altschul et al. (1990) and significantly improved by Altschul et al. (1997). It is a very fast search algorithm that is used to separately search protein or DNA databases. BLAST is best used for sequence similarity ...Tags: blast, settings, default, alignments, options
1987 days ago
Comment on "Run miniasm assembler on nanopore reads !"
...int ">"$2"\n"$3}' 20170918_oly_pacbio_miniasm_reads.gfa > 20170918_oly_pacbio_miniasm_reads.fasta 4 Run minimap with default settings Using the default settings maps the FASTQ reads back to...2181 days ago