Results for "short reads mapping"
Blogs
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on..., SyMAP (http://www.symapdb.org/) SyMAP (Synteny Mapping and Analysis Program) v4.0 is...itable image of syntenic relationships or physical mapping can be obtained. http://www.a...2611 days ago
List of bioinformatics packages for NGS analysis !
Package suites gather software packages and installation tools for specific languages or platforms. We have some for bioinformatics software. Bioconductor &ndas...1143 days ago
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Bookmarks
Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec) and k-ne...1147 days ago
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3911 days ago
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Files
Bioinformatics approach to Boar Taint
...were done in Illumina HiSeq2000 to >10X average coverage. Short reads generated from these samples...aplotypes in close linkage disequilibrium with QTLs and fine mapping of QTLs through association mapping of genotyped SNPs. &nb...3790 days ago
- Randomness and Probability Randomness and probability are two differnet concepts: p...s the object to be measured by probability. For example, probability is a mapping from randomness to the real n...
1615 days ago
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Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it allow....Ancestral states reconstructions: Marginal likelihood.(Weighted) substitution mapping.Sequences simulation under an...3948 days ago
Monitor running jobs on Linux server
You as a bioinformatican run lots of program on your servers. Sometime the shared server is...current time, how long the machine has been up, how many users are logged in, and the short/m...3622 days ago
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Top-level pages
- Genomics is the study of the genomes of organisms. The field incl...hniques of sequencing, genome mapping, data storage, and bioinforma...eting held in Maryland on the mapping of the human genome in 1986.T...issions that contain a single short mRNA sequence, and complex subm...
3943 days ago
Bioinformatics Courses Around the World
Bioinformatics Courses around the world Here is the list Bioinformatics courses offere...metryhttp://www.cs.helsinki.fi/combi/ Human Genome Mappi...Part-time Modular MSc in Bioinformatics and regular short professional updating courses,...3944 days ago
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Wire posts
News
- "In recently published paper (entitled "Microbial Production of Short-chain Alkanes") in Nature journal on September 29,...ism to provide the fatty acid derivatives that are short...a novel synthetic pathway for the biosynthesis of short-c...
3871 days ago
Illumina reveals first dataset of long reads
With the help of Moleculo technology , acquired by Illumina releases new service for long reads sequencing i.e., FastTrack Long Reads. Average read length is around 8,500 base pair...also check following pages for publications on long reads a...3909 days ago
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Opportunity posts
Ph.D. Fellowship (Computational Biology/Bioinformatics) : Cork, Ireland : Cork, Ireland
Ph.D. Fellowship (18,000 euro/pa, plus tuition fees at the EU students rate) is avai...some profiling data. Ribosome profiling (ribo-seq) is a technology that allows mapping positions of the ribosomes on...3917 days ago
CSIR-INSTITUTE OF GENOMICS & INTEGRATIVE BIOLOGY
CSIR-INSTITUTE OF GENOMICS & INTEGRATIVE BIOLOGY, Mall Road, Delhi 110007 POSITIONS O...atus or after due date. The email will be sent to the short...will have an option to give reply in Hindi. Note: The shortli...3903 days ago
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ResearchLabs posts
- Melanie Bahlo is an applied statistician working in the areas of statist...tics and population genetics. Her main area of research is linkage mapping, in humans and mice. Research Area: Mapping loci in ENU mutants in mice i...
3949 days ago
- Roslin Bioinformatics Group The Law group provides internal Institute-specific de...national animal science community, particularly tools and resources for genome mapping. Head: Andy Law. Members:...
3814 days ago
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Fun
Introduction to programming. Write short programs that generate graphics and animation.
Introduction to programming. Write short programs that generate graphics and animation. http://funprogramming.org/3552 days ago
Video
- A short overview of Bioinformatics applications brought to you by the University of South Dakota Computer Science Department
3916 days ago
A Brief Introduction to Genetics
A Brief Introduction to Genetics is a short documentary film that explores the history of genetics & genomics and the underlying concepts that provide the foundational know...3904 days ago
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Bio-Scripts
- P
2872 days ago
Create genome scaffolding with Perl
#!/usr/bin/perl use warnings; use strict; use English; use Pod::Usage; ## uses pod d...e} && $targetSeqs{$tName}){ my %meta = (); my $short...= ($tSize < $qSize) ? 1 : 0; my $longTarget = (1 - $shortTa...2309 days ago
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Polls
Which of the following programming language is best for a bioinformatics beginner?
I will be doing NGS in the course of my research work and I will like to learn a programming language which is...informatics tools or software. I basically want to do de-novo assembly, map reads, align reads,...3532 days ago
Groups
Bioinformatics Skill Development Program (BSDP)
Hey! Welcome to Bioinformatics Skill Development Program (BSDP) series group....The Bioinfor...matics education portal, began offering one and two week short...advanced technologies.For two years, the series offered short c...3708 days ago
Tags
Latest paper on comparison of mapping tools
A. Hatem, D. Bozdag, A. E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics, 14(1):184, 2013. http://bmi.osu.edu/hpc/software/benchmark/ http://bmi.osu.edu/hpc/software/pmap/pmap.html Other similiar papers: http://online.liebertpub.com/doi/pdf/10.1089/cm...Tags: Sequencing, short reads mapping, SNP, GSNAP, BWA, Bowtie, BWA, mrsFAST
3897 days ago
Comments
Comment on "LAMSA: fast split read alignment with long approximate matches"
...s: -t --thread [INT] Number of threads. [1] -l --seed-len [INT] Leng...GEM-mapper's fastest mode(--fast-mapping=0). [false] Scoring option...mum error rate of mismatch within reads. [0.04] -T --read-type [STR]...). [stdout] -h --help Print this short usage. -H --HELP Print a detail...2123 days ago
- ...(Lib_id=INT1) that infer short insert size (< INT2) are...imation. -s INT : Mapping seed length (default 32)...Map paired-end(mate-pair) reads on scaffolds, assemble reads lo...THER OPTIONS -s INT : Mapping seed length (default 32)...
2800 days ago
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