Nucl2Vec: Local alignment of DNA sequences using Distributed Vector Representation
We demonstrate a novel approach forlocal alignment of DNA reads with respect to reference genome.For this process we have used Skip-gram model for creatingencoding(Nucl2Vec) and k-ne...1147 days ago
Comparison of Short Read De Novo Alignment Algorithms
Excellent article to introduce different sequencing methods along with tools for de novo assembly of sequencing reads and their relevant references. Title: Comparison of Short Read De Novo Alignment Algorithms Author: Nikhil Gopal3911 days ago
Next Generation Sequencing (NGS) Tutorials
Institute of computational biomedicine, Cornell University provide an NGS workshop t...OI: 10.1093/bioinformatics/btr441 ngs_backbone: a pipeline for read cleaning, mapping and SNP calling using Next Ge...3488 days ago
Latest paper on comparison of mapping tools
.... E. Toland, U. V. Catalyurek "Benchmarking short sequence mapping tools" BMC Bioinformatics,...rdjournals.org/content/28/24/3169 Some new Mapping tool links: GSNAP http://re...Page SHRiMP (for AB SOLiD color-space reads) http://compbio.cs.toronto.edu...3897 days ago
Bio related lectures from internationally renowned scientists!!!
"iBiology.org was developed to bring the best biology to people throughout the world for fre...investigator, Professor Ron Vale, iBiology has grown to include over 300 seminars and short t...3849 days ago
shovill: Assemble bacterial isolate genomes from Illumina paired-end reads
Shovill is a pipeline which uses SPAdes at its core, but alters the steps before and after the primary assembly step to get similar results in less time. Shovill also s...1220 days ago
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Bioinformatics algorithms tutorials
Useful bioinformatics tutorial, such as De Bruijn Graphs for NGS AssemblyAlgorithms for PacBio ReadsSo...3604 days ago
Integrative Genomics Viewer (IGV) tutorial
The Integrative Genomics Viewer (IGV) from the Broad Center allows you to view several types of data files involved in any NGS analysis that employs a reference genome, including how reads f...3585 days ago