Results for "single-molecule physical genome mapping"
Blogs
Bioinformatics tools developed for Oxford Nanopore data analysis !
MinION is the only portable real-time device for DNA and RNA sequenci...gth, which offers great prospects for genome assembly. Generally, assemble...noOK NanopolishNanopore analysis and genome assembly softwarehttps://gith...b.com/arq5x/poretools SSPACE-LongReadGenome...2322 days ago
BBTools for bioinformatician !
BBMap.sh Mapping Nanopore reads BBMap.sh has a length cap of 6...ut I found 1000 gave a higher mapping rate. Using Pai...s the ability to simulate metagenomes. coverage=X will automat...Code: $ randomreads.sh ref=genome.fasta out=reads.fq len=100 rea...2272 days ago
Basic command-line to run BLAST
The goal of this tutorial is to run you through a demonstration of the command line, which you may not have seen or used much before. All of the commands below...2245 days ago
Popular bioinformatics educational resources !
Followings are the list of popular bioinformatics educational resources Bii.a-star.edu...nology, Finland. Ornl.gov/sci/techresources/Human_Genome/education/education.shtml A...resource for introductory information on the Human Genome...2194 days ago
- LiftOver is a necesary step to bring all genetical analysis to the same reference b...iftOver can have three use cases: (1) Convert genome position from one genome assembly to another genome as...er from one build to another (3) Convert both genome...
2161 days ago
chromoMap-An R package for Interactive visualization and mapping of human chromosomes
chromoMap is an R package that provides interactive, conf...viz. the "chromosome heatmap" that, in addition to mapping elements, can visualize the d...n. You can map thousands of genes and can view all mappings easily. Users can investigat...2142 days ago
- Download this https://github.com/trinityrnaseq/trinityrnaseq/releases/tag/Trinity-v2.6.6 ➜ cd trinityrnase...meter **, this functionality continues to be under development) # # --genome_guided_bam :genome...
2134 days ago
List of motif discovery tools !
In genetics, a sequence motif is a nucleotide or amino-ac...aphy of proteins with structural and topographical mapping of functionally annotated re...Extraction, Description and ANalysis Tool Conduct genome wide functional and structural...1994 days ago
CANU genome assembly parameters !
Choose the appropriate parameters to run Canu and run it. The assembly will take about...-p \ -d \ genomeSize=[g|m|k] \.... canu -p test_asmbl \ -d asm_test3 \ genomeS...1946 days ago
List of tools frequently used while genome assembly
List of tools frequently used while genome assembly: I have used the following assemblers Spades (v. 3.10.1)...18) Nanopolish (v. 0.8.3) I have used the following tools to assess genome...1931 days ago
