2349 days ago
Single Cell RNAseq data analysis tutorial !!
A major breakthrough (replaced microarrays) in the late 00’s and has been widely used since Measures the average expression level for each gene across a...2349 days ago
2349 days ago
Edit distance application in bioinformatics !
There are other popular measures of edit distance, which are calculated using a different set of allowable edit operations. For instance, the Damerau–Le...2339 days ago
Tools for bacterial whole genome annotation
RAST – Web tool (upload contigs), uses the subsystems in the SEED database and provides detailed annotation and pathway analysis. Takes several hours...2330 days ago
Bioinformatics Web Application Development with Perl
Perl's second wave of adoption came from the growth of the world wide web. Dynamic web p...and techniques of modern Perl. See, for example, the ever-growing list of technologies Built in Perl. Modern P...2320 days ago
BBSplit: Read Binning Tool for Metagenomes and Contaminated Libraries
BBSplit internally uses BBMap to map reads to multiple genomes at once, and determine which genome they match best. This is different than with ordinary mapping. If a geno...2313 days ago
List of visualization tools for genome alignments
Genome browsers are useful not only for showing final results but also for improving...sp; Web-based visualization of sequences derived from multiple sequencing technologies. Low- or high-depth read pile...2282 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-celle...848 days ago
Some useful Bioinformatics links
Reference-free prediction of rearrangement breakpoint reads | Bioinformatics | Oxford Aca...eads. https://github.com/GATB/DiscoSnp De novo assembly | Oxford Nanopore Technologies https://nanoporetech.com/tax...2240 days ago