Results for "structural and sequence variation"
Blogs
Useful Bioinformatics Analysis Tools !
...n containing hundreds of thousands of sequences). • ..., Gudys, A., FAMSA: Fast and accurate multiple sequence alignme...ssor of collections of genome sequences. • Deorowic...icz, S., KMC 3: counting and manipulating k -mer statistics,&nb...859 days ago
List of comparative genomics resources !
...MICS -- A Database to Compare Structural and Functional Annotations of Proteins between Sequenced Genomes Compare structural and functional annotations of proteins between sequenced genomes. ARED Orga...veals AU-rich element cluster variations between human and mouse View AREs in the human...673 days ago
Online resources on must-read papers in evolutionary biology, for a literature club
1. *Nick Barton:* - The textboo...ndamental Theorem. Genetic Variation 1a. Lewontin, R. C., and J. L. Hubby. 1966. A molecula...l populations. II. Amount of variation and degree of heterozygosity in n...et. Res. 23: 23-35. Understanding sequence variation 1. Begun D. J., Aquadro C. F...673 days ago
Understanding DUMP files from NCBI Taxonomy database !
*.dmp files are bcp-like dump from GenBank taxonomy database General infor... -- 1 if this subtree has no sequence data yet comments -- free-text comments and citations Taxonomy names...n text -- any text (usually article name and autho...656 days ago
Must read paper and books in evolution biology !
1. *Nick Barton:* - The textboo...ndamental Theorem. Genetic Variation 1a. Lewontin, R. C., and J. L. Hubby. 1966. A molecula...l populations. II. Amount of variation and degree of heterozygosity in n...et. Res. 23: 23-35. Understanding sequence variation 1. Begun D. J., Aquadro C. F...573 days ago
Tools for Sequence translation !
BOrf - https://github.com/betsig/borf CodAn - https://github.com/pedronachtigall/CodAn EMBOSS-Sixpack - https://www.ebi.ac.uk/Tools/st/em...540 days ago
- DeepMind’s artificial intelligence system AlphaFold2, predicts the 3D structure of a protein based on its amino acid sequence....
534 days ago
Bioinformatics tools to explore SSRs in genomes !
There are several bioinformatics tools that can be used to explore Simple Sequence Repeats (SSRs), which ar...uences from various organisms and can identify perfect, compound, and imperfect SSRs. SSR Locator:...an be used to analyze genomic and transcriptomic sequences from vari...420 days ago
Common methods to discover tandem repeats
...s manner in the genome. These sequences are often used as genetic markers and are important in many areas of genetics and genomics research. Here are some m...ntifies tandem repeats in DNA sequences. It is available for free download and can be used on both nucleotide and...419 days ago
Common steps for reads mapping !
Mapping reads to a reference genome is an e...ailable, such as BWA, Bowtie, and HISAT2. Choose a mapper that...eating an index of the genome sequence that allows the mapper t...he mapper is run with the command-line interface or using a graphica...ty, removing duplicate reads, and calli...419 days ago
