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Results for "structural and sequence variation"

Wire posts

  • Rahul Nayak

    The BLAST parser http://kirill-kryukov.com/study/tools/blast-parser/ #BLAST #Parser #Genome #Match #Sequence #Similarity

    3140 days ago

  • Jitendra Narayan

    #Scientists create world's largest catalog of #human genomic #variation http://www.genome.gov/27562711

    3134 days ago

  • Neelam Jha

    A powerful #multiple #sequence #alignment #browser http://wasabiapp.org/

    2964 days ago

  • Archana Malhotra

    Dynamic programming http://www.avatar.se/molbioinfo2001/dynprog/dynamic.html #Programming #Alignment #Sequence #Dynamic

    2954 days ago

  • Neelam Jha

    PAired-eND Assembler for DNA sequences https://github.com/neufeld/pandaseq #Sequence #Assembler #PANDAseq

    2949 days ago

  • Radha Agarkar

    Extract fasta sequence by Ids: perl -ne 'if(/^>(\S+)/){$c=grep{/^$1$/}qw(id1 id2)}print if $c' fasta.file #Perl #PerlOneliner #PerlTrick #Extract #Ids #Fasta

    2786 days ago

  • Radha Agarkar

    Extract sequence by using Ids file (assuming one ids in a line): perl -ne 'if(/^>(\S+)/){$c=$i{$1}}$c?print:chomp;$i{$_}=1 if @ARGV' ids.file fasta.file #PerlTricks #PerlOneliner #Perl #Extract #Ids #

    2786 days ago

  • Shruti Paniwala

    Extract a fasta sequence from multifasta file: samtools faidx multitest.fa and then samtools faidx multitest.fa fasta_id > out.fa #Samtools #Fasta #Extract #Multifasta

    2746 days ago

  • Jit

    #GC-Profile: a web-based tool for #visualizing and analyzing the #variation of #GC content in #genomic sequences https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1538862/

    2625 days ago

  • Bulbul

    Interesting plotting https://genomebiology.biomedcentral.com/articles/10.1186/s13059-015-0678-1 #Plot #Structure #Variation #Cotton

    2692 days ago

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