STRUM: structure-based prediction of protein stability changes upon single-point mutation
...changes on a variety of features at different levels of sequence and structure properties. The unique charac...of STRUM is the combination of sequence profiles with low-resolution structure models from protein structure...2070 days ago
GenomeThreader: Gene Prediction Software
GenomeThreader is a software tool to compute gene structure predictions. The gene structure predictions are calculated using a s...al cDNA/EST and/or protein sequences are used to predict gene structures via spliced alignments. ...2047 days ago
SiLiX: implements an ultra-efficient algorithm for the clustering of homologous sequences
...raph-theoretical framework to interpret similarity pairs as edges of a network. A very efficient algorithm, based on the Disjoint Sets Data Structure, allows the computation of se...1977 days ago
Biotite: A general framework for computational biology
...ite consists of four sub packages: sequence, structure, databases, and application. The sequence and structure modules serve for the an...package focuses on working with sequence and structure data and supports various fil...1971 days ago
GeneOverlap: An R package to test and visualize gene overlaps
...el hypotheses. For example, histone modification is an important cellular mechanism that can pack and re-pack chromatin. By making the chromatin structure more dense or loose, the gene...1961 days ago
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MACSE: Multiple Alignment of Coding SEquences Accounting for Frameshifts and Stop Codons
...tomatic solution to align protein-coding gene datasets containing non-functional sequences (pseudogenes) without disrupting the underlying codon structure. It has also proved useful in...1909 days ago
DISTRUCT: a program for the graphical display of population structure
...cally display results produced by the genetic clustering program structure or by other similar prog...ual membership coefficients in the same form as used in "Genetic structure of human populations" Sc...1874 days ago
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