String graph based genome assembly software and tools !
In graph theory, a string graph is an intersection graph of ...he FM-index. As the FM-index is a compressed data structure, the algorithms are very memo...o assembly of large genomes using compressed data structure...2328 days ago
List of motif discovery tools !
...otein annotation by secondary structure elements Perform secondary structure predictions on protein sequen...sidues from proteins of known structure Search for functional annota...BSite -- a database of the 3D structure of protein functional sites...ional sites on macromolecular structure...1993 days ago
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinf...s, 25000 investigational drugs and 80000 chemical structures http://scientific.thomson.co....gov/ sites/entrez?db=omim PDTD: 3D drug target structure...1434 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to reach USD 13.1 billion.... The company provides its services for protocol optimization, probe designing, array layouts, project designing, and nucleic acid analysis to...1259 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to medium-sized genomes. What is de...to genome assembly. No previous knowledge of the source DNA sequence length, structure...1204 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake &ldquo...934 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annotations of Protein...based probe retrieval and design A public online resource for identifying or designing 'universal' overgo-hybridizat...677 days ago
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