String graph based genome assembly software and tools !
In graph theory, a string graph is an intersection graph of ...he FM-index. As the FM-index is a compressed data structure, the algorithms are very memo...o assembly of large genomes using compressed data structures...2342 days ago
List of motif discovery tools !
...otein annotation by secondary structure elements Perform secondary structure predictions on protein sequences....BSite -- a database of the 3D structure of protein functional sites S...ter -- protein cleavage sites prediction tool Predicts potential prot...2006 days ago
Useful links to therapy, disease, drug and drug-target network data:
Useful links to therapy, disease, drug and drug-target network data: DrugBank: a bioinf...s, 25000 investigational drugs and 80000 chemical structures http://scientific.thomson.co....gov/ sites/entrez?db=omim PDTD: 3D drug target structure...1447 days ago
Protocol for De novo Genome Assembly using Illumina Reads
In this protocol, we address and describe the de novo assembly method for small to medium-sized genomes. What is de...to genome assembly. No previous knowledge of the source DNA sequence length, structure...1217 days ago
Basic Structure of Snakemake Pipeline Run !
/user/snakemake-demo$ ls config.json data envs scripts slurm-240702.out Snakefile data = mock data for the snakefile to use Snakefile = name of the snakemake “...947 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Structural and Functional Annota...-- a database of genome-wide mammalian cis-regulatory module predictions Conduct genome-wide cis-regulatory module (CRM) predictions for both the human and the m...690 days ago
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