Results for "summary"
Bio-Scripts
Download the genome from NCBI using bash script/command
...# Look for genome assembly summary and extract the URL # USER need to provide the right summary file to curl # Commentline...genomes/refseq/fungi/assembly_summary.txt' | awk '{FS="\t"} !/^#/ {...vertebrate_mammalian/assembly_summary.txt' | awk '{FS="\t"} !/^#/ {...2537 days ago
Download the gff files from NCBI using bash script/command
...# Look for genome assembly summary and extract the URL # USER need to provide the right summary file to curl # Commentline...mes/genbank/bacteria/assembly_summary.txt' | awk '{FS="\t"} !/^#/ {.../refseq/invertebrate/assembly_summary.txt' | awk '{FS="\t"} !/^#/ {...2528 days ago
Genetic Algorithms demonstration with word DNA in Perl
#!/usr/bin/perl -w # GA demonstration with word DNA (512 bits) use strict; use Data::Dumper; # individuals in the population my $popsize = 1024; # a good s...2377 days ago
- ...re.errors.gff.gz 04.break echo "[REAPR pipeline] Running summary" /home/urbe/Tools/Reapr_1.0.18/reapr summary 00.assembly.fa 03.score 04.br...re.errors.gff.gz 04.break echo "[REAPR pipeline] Running summary" /home/urbe/Tools/Reapr_1.0....
2104 days ago
- ...rCrosscheckMetrics (Picard) Clusters the results of a CrosscheckFingerprints run by LOD score CollectAlignmentSummaryMetrics (Picard) Produces a summary of alignment metrics from a S...
2080 days ago
Backward Elimination with Python
...axVar): x = np.delete(x, j, 1) regressor_OLS.summary() return x SL = 0.05...delete(x_rollback, j, 1) print (regressor_OLS.summary()) r...1960 days ago
Installing ggplot2 and its dependencies on Ubuntu !
...g.status: creating src/Makevars config.status: creating src/uconfig_local.h config.status: creating src/install.libs.R *** stringi configure summary: ICU_FOUND=1 STRING...1555 days ago
Bash command to explore assembly summary genbank !
wget https://ftp.ncbi.nlm.nih.gov/genomes/genbank/assembly_summary_genbank.txt pip3 install csvkit csvcut -t -K 1 -c 'excluded_from_refseq' assembly_summary_genbank.txt \ | tail -n +2 | tr ";" "\n" \ | sed -e 's/^ //' -e 's/ $//' | grep -v '""' \ | sort | uniq -c | sort -nr773 days ago
Perl script to parse blast results and plot basic stats !
...MENT_LENGTH'); my ($min_evalue, $max_evalue, $avg_evalue) = calculate_summary_stats(\@blast_entries, 'EVALUE'); my ($min_bitscore, $max_bitscore, $avg_bitscore) = calculate_summary_stats(\@blast_entries, 'BITSC...99 days ago
