Results for "transcriptome"
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...lexible manner to perform both simple and complex bioinformatics tasks. The next-generation sequencing included whole genome sequencing(WGS), transcriptome sequencing (whole cDNA sequen...3228 days ago
- ...mostly limited to technical measures like N50. BUSCO provides measures for quantitative assessment of genome assembly, gene set, and transcriptome completeness based on evoluti...
2911 days ago
- .... Training Resources: Bioinformatics Workshop (Webinars) Bioinformatics Training Slides Specialized Applications: De Novo Assembly Transcriptome analysis Base Modification A...
2621 days ago
- ...t a reference genome. It is an exact local transcriptome assembler that allows to iden...00M reads. KisSplice is not a full-length transcriptome assembler. This means that it...on the availability of a reference genome/transcriptome and on the need to perform a...
2813 days ago
- ...r example, here we show a gene fusion in the SK-BR-3 breast cancer cell line linking the genes CYTH1 and EIF3H. While it has been found in the transcriptome previously, genome sequencing...
2747 days ago
GraphMap - A highly sensitive and accurate mapper for long, error-prone reads
...al bit-vector and Gotoh, anchored). Overlapping of reads for de novo assembly. Transcriptome mapping through internal construction of a transcriptome from a given genomic referenc...2518 days ago
- Magic-BLAST is a tool for mapping large next-generation RNA or DNA sequencing runs against a whole genome or transcriptome. Each alignment optimizes a composite score, taking into accoun...
2315 days ago
PLAR: Pipeline for lncRNA annotation from RNA-seq data
...from GENCODE v30) to lncRNAs from other species identified by PLAR. Available here. Species Assembly Code Transcriptome lncRNAs Protein-cod...843 days ago
Scallop: reference-based transcriptome assembler for RNA-seq
Scallop is an accurate reference-based transcript assembler. Scallop features its high accuracy in assembling multi-exon transcripts as well as lowly expressed transcripts...2183 days ago
ASplice: a scalable and memory-efficient algorithm for de novo transcriptome assembly
...it is feasible to study entire transcriptomes of non-model organisms. Whil...ically designed for performing transcriptome assembly from high-throughput...iversity researchers develop a transcriptome assembly algorithm that recov...fficient algorithm for de novo transcriptome assembly of non-model organis...2127 days ago
