Genome assembly tutorial "Genome Assembly for short and long reads"
In this lab we will perform de novo genome assembly of a bacterial genome. You will be guided through the genome assembly starting with data quality control, through to building contigs and analysis of the results. At the end of the lab you will know: How to perform basic quality checks on the...Tags: Genome, assembly, tutorial, short, long, reads
1931 days ago
Tags: AWK, UNIX, Learn, tutorial
1834 days ago
Machine learning training and courses in bioinformatics !
Machine learning techniques have been successful in analyzing biological data because of their capabilities in handling randomness and uncertainty of data noise and in generalization. In this class, we will learn basics about probabilistic models and machine learning techniques. We will focus on ...Tags: Machine, learning, Bioinformatics, course, tutorial
1584 days ago
Tags: bioinformatics, workbook, book, tutorial, learn
1213 days ago
Genome assembly training tutorial at Galaxy !
In this tutorial we assemble and annotate the genome of E. coli strain C-1. This strain is routinely used in experimental evolution studies involving bacteriophages. For instance, now classic works by Holly Wichman and Jim Bull (Bull 1997, Bull 1998, Wichman 1999) have been performed using this s...Tags: Genome, assembly, training, tutorial, Galaxy
1223 days ago
Calling variants in non-diploid systems
The main challenge associated with non-diploid variant calling is the difficulty in distinguishing between the sequencing noise (abundant in all NGS platforms) and true low frequency variants. Some of the early attempts to do this well have been accomplished on human mitochondrial DNA a...Tags: Variant, Prokaryotic, virus, genome, snp, tutorial, galaxy
1042 days ago
Tags: pangolin, lineage, tutorial, learn
875 days ago
Tags: snakemake, tutorial, links, commands, learn
725 days ago