Results for "unix"
Top-level pages
Useful Links for Bioinformaticians
...w.gustavo.net/programming/cgi.shtml www.cgidir.com/Tutorials/ webdesign.about.com/cs/cgi/ http://www.cgi101.com/class/ Unix Tutorial www.ee.surrey.ac.uk/Teaching/Unix/ webreference.com/programmin...3153 days ago
Most Commonly used Awk by Bioinformatician
...re to read this stuff properly explained. roll Two thorough tutorials: http://www.gnu.org/software/gawk/manual/gawk.html http://www.grymoire.com/Unix/Awk.html A famous list of us...3935 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
Global overview papers Next generation quantitative genetics in plants. Jiménez-Gómez, Frontiers in Plant Science 2:77, 2011 Full Text [equally relevant...3802 days ago
Perl one-liner for bioinformatician !!!
...saperl -ple 's/(\w+)/\u$1/g' #Camel Casingperl -pe 's|\n|\r\n|' #Convert unix new lines into DOS new lines:perl -pe 's|\r\n|\n|' #Convert DOS newlines into unix new lineperl -pe 's|\n|\r|' #...3650 days ago
Commercial and public next-gen-seq (NGS) software
...ences. Developed by Thomas Wu and Colin Watanabe at Genentec. C/Perl for Unix. gnumap - The Genomic Next-ge...ats using statistics. From authors at Brigham Young University. C source/Unix. MAQ - Mapping and Assembly w...3541 days ago
Software packages for next gen sequence analysis
...ences. Developed by Thomas Wu and Colin Watanabe at Genentec. C/Perl for Unix. * gnumap - The Genomic Next-...ats using statistics. From authors at Brigham Young University. C source/Unix. * MAQ - Mapping and Assembly...3265 days ago
Awesome perl frameworks, libraries and software - PART 1
...system monitoring tool. vsespb/mt-aws-glacier - Perl Multithreaded Multipart sync to Amazon Glacier skx/sysadmin-util - Tools for Linux/Unix sysadmins. perl-carton/carto...2512 days ago
Converting BLAST output into CSV
...ut. Generally, that’s the case - you want to retrieve all matches, or do a reciprocal BLAST, or something. As with most programs that run on UNIX, the text output is in some s...2360 days ago
PerlOneLiner for Bioinformatician
...the number E to 39 decimal placesperl -Mbignum=e -le 'print e' # Print UNIX time (seconds since Jan 1, 19...eginning and end of each lineperl -ple 's/^[ \t]+|[ \t]+$//g' # Convert UNIX newlines to DOS/Windows newli...2324 days ago
Installing Bio::SCF perl module
...emake testmake install jitendra@jitendra-UNLOCK-INSTALL[Bio-SCF-1.01] perl Makefile.PL []Checking if your kit is complete...Looks goodGenerating a Unix-style MakefileWriting Makefil...2241 days ago
