Results for "variant"
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DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found th...1139 days ago
Next Generation Sequencing (NGS) Tutorials
...ww.isb-sib.ch/training/training-activities-schedule/archive-2013.html Variant Detection (Model organism) Ad...ogle.com/document/pub?id=1CuKkKylVDb03tnN7RSWl5EUzleetn0ctjmvaidPKLxM Variant Detection Introductory tutori...3480 days ago
- ...-Seq analysis previously done using a Cuffdiff analysis. Variant Detection Basic Galaxy Tutorial Variant Detection tutorial In this...ured for WGS data; there is an exome branch configured for variant calling in exome data.To run...
3646 days ago
- ...quence reads, reference-based alignments, and variant calls, using Google's cloud infrastructure. Store alignments and variant calls for one genome or a mil...duce. Explore data by slicing alignments and variants by genomic range across one...
3481 days ago
- DISCOVAR is a new variant caller and DISCOVAR de novo a new genome assemb...was not previously possible. DISCOVAR can call variants on a region by region basis,...ntially tiling an entire large genome. DISCOVAR variant calling is under active devel...
2931 days ago
- ...el with Illumina data, ALE recovers 215 of 222 (97%) single nucleotide variants in a training set from a GC-...ors in a Lambda Phage genome, surpassing even Pacific Biosciences' own variant caller, EviCons. In summary,...
2924 days ago
MOSAIK: A Hash-Based Algorithm for Accurate Next-Generation Sequencing Short-Read Mapping
...This method is well-suited to capture mismatches as well as short insertions and deletions. To support the growing interest in larger structural variant (SV) discovery, MOSAIK provid...2899 days ago
- ...s to identify SNPs, indels and alternative splicing events. It can deal with an arbitrary number of biological conditions, and will quantify each variant in each condition. It has bee...
2812 days ago
- Most variant calling pipelines result in files containing large quantities of variant information. The variant call format (vcf) is an...
2809 days ago
- A probabilistic framework for structural variant discovery. Ryan M Layer, Colby Chiang, Aaron R Quinlan, and Ira M Hall. 2014. "LUMPY: a Probabilistic Framework for Structural Variant Discovery." Genome Biology 15...
2803 days ago
