1560 days ago
10 NGS services companies around the globe !
The global NGS services market is expected to re..., pipelines and workflows, compute resources, data analysis reports, and case studies. GA...ase construction, genome research, and bioservices analysis system consulting services. M...1272 days ago
Bioinformatics tools for telomere to telomere assembly !
...– k-mer-based assembly and variant calling evaluation for improv... pbaa (PacBio Amplicon Analysis) – separates complex m...ving potential chimeric sequence variants (Yuanyuan Cheng @Yuanyu...aring, and annotating structural variant (SV) calls in VCF format (Aaro...1004 days ago
Protocol for De novo Genome Assembly using Illumina Reads
...tp://ingap.sourceforge.net/inGAP is also useful for finding structural variants between genomes from read ma...ms/research/projects/annotation-service/ Frequent command use for the analysis are at: https://bioinformati...1217 days ago
Ancient whole genome duplication (WGD) detection tools !
...etection, one is collinearity analysis, and the other is based on th...ave posted articles about the analysis process of WGD. I searched fo...t conda activate wgdstart our analysis environment, and then start t...l-vs-ALl + MCL classification analysis. mix: Hybrid modeling of Ks...1167 days ago
Frequently used bioinformatics tools for viral genome analysis !
IVA: accurate de novo assembly of RNA virus genomes. Hunt M, Gall A, Ong SH, Brener J, Ferns B, Goulder P, Nastouli E, Keane JA, Kellam P, Otto TD. Bioinformatics. 2015...1059 days ago
Classification of SARS-CoV2 Variant !
The scientists established some guidelines for determining whether a variant is a legitimate branch of an existing lineage: The variant should be transmitted from its original location to another "geographically disti...903 days ago
Illumina based assembly pipeline steps !
...mosdepth) Choice of multiple variant calling and consensus sequenc...ult for metagenomics data) Variant annotation (SnpEff, SnpSift)...sment report (QUAST) Lineage analysis (Pangolin) Clade assignment...read, alignment, assembly and variant calling results (MultiQC)...889 days ago
Useful Bioinformatics Analysis Tools !
CoMeta Classificier of reads from metagenomic sequencing experiments. • Kawulok, J., Deorowicz, S...7; 33(7):1086–1089, TGC Compressor of collections of genomes given in Variant...876 days ago
List of comparative genomics resources !
3D-GENOMICS -- A Database to Compare Struc...nomes Conduct comparative biometric analysis of chromosomes of different o...s/Metagenomes A data management and analysis system for metagenomes I...ams of phylogenetic and evolutionary analysis. PhyloPat -- the phyloge...689 days ago