Results for "viral"
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...uencing reads. Each read is directly assigned to a taxon within the NCBI taxonomy by comparing it to a reference database containing microbial and viral protein sequences. By defaul...2883 days ago
- ...ion on Read the Docs. A set of tools for viral metagenomics. virmet is call...command subcommand syntax: virmet fetch --viral n, for example, downloads the...etch download genomes update update viral/bacterial database index&nbs...
2779 days ago
Genome Annotation Transfer Utility (GATU)
...er be accepted for/rejected from annotation. GATU can handle multiple-exon genes as well as mature peptides. Although it was designed for use with viral genomes, GATU can also be use...2548 days ago
HTTDB - Horizontally transferred transposable elements database
...expanded the database to include Horizontal-Virus Transfer also known as endogenization events which is characterized by the stable integration a viral genomic fragment into the hos...2308 days ago
- ...f constituent reads. VICUNA efficiently handles ultra-deep sequence data with tens of thousands fold coverage. http://software.broadinstitute.org/viral/docs/vicuna_v1.0.pdf
1364 days ago
LoReTTA, a user-friendly tool for assembling viral genomes from PacBio sequence data
LoReTTA (Long Read Template-Targeted Assembler), a tool designed for performing de novo assembly of long reads generated from viral genomes on the PacBio platform. LoReTTA exploits a...1062 days ago
Calling variants in non-diploid systems
...early attempts to do this well have been accomplished on human mitochondrial DNA although the same approaches will work equally good on viral and bacterial genomes (Reboll...1058 days ago
- ...It detects microbial sequences from FASTQ data, generates JSON reports and visualizes the result in HTML reports. This tool can be used to detect viral infectious diseases, like COV...
891 days ago
Refseq viraal genome sequences !
List of all viruses on NCBI https://ftp.ncbi.nlm.nih.gov/refseq/release/viral/891 days ago
ContigExtender: a new approach to improving de novo sequence assembly for viral metagenomics data
ContigExtender, was developed to extend contigs, complementing de novo assembly. ContigExtender employs a novel recursive Overlap Layout Candidates (r-OLC) strategy th...12 days ago
