GAM-NGS: genomic assemblies merger for next generation sequencing
...;blocks) are identified through reads' alignments and stored in a weightedgraph. The merging phase is carried out with the help of this weighted graph that allows an opt...2709 days ago
LIBSVM -- A Library for Support Vector Machines
...t multi-class classification Cross validation for model selection Probability estimates Various kernels (including precomputed kernel matrix) Weighted SVM for unbalanced data Both...2483 days ago
Bio++ : C Language libraries for your biological need
...d models (beta). Molecular evolution tools Parameter estimation under maximum likelihood.Ancestral states reconstructions: Marginal likelihood.(Weighted) substitution mapping.Sequenc...3963 days ago
Genome Assembly Tools and Software - PART2 !!
...ing and frequency estimation methods. This software uses a simple error correction, viral variants assembling based on maximum-bandwidth paths in weighted read graphs and frequency est...2701 days ago
3962 days ago
Commercial and public next-gen-seq (NGS) software
...en Langmead and Cole Trapnell. Linux, Windows, and Mac OS X. BWA - Heng Lee's BWT Alignment program - a progression from Maq. BWA is a fast light-weighted tool that aligns short sequen...3534 days ago
Genetic Algorithms demonstration with word DNA in Perl
...$fitness+= $freqs{$entry} if exists $freqs{$entry}; } return $fitness; } # end of fitness() } # Function to sample from an array of weighted elements # originally writte...2387 days ago
kWIP: The k-mer weighted inner product, a de novo estimator of genetic similarity
The k-mer Weighted Inner Product. This software implements a de novo, alignment free measure of sample genetic dissimilarity which operates upon raw sequencing reads. It is able to calculate the genetic dissimilarity between samples without any reference genome, and without assembling one. ...Tags: kWIP, k-mer, weighted, inner, product, de novo, estimator, genetic, similarity
2183 days ago