Results for "whole"
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Smudgeplot: Inference of ploidy and heterozygosity structure using whole genome sequencing data
This tool extracts heterozygous kmer pairs from kmer count databases and performs gymnastics with them. We are able to disentangle genome structure by comparing the sum of kmer pair coverages (CovA + CovB) to their relative coverage (CovB / (CovA + CovB)). Such an approach also allows us to analy...Tags: Smudgeplot, Inference, ploidy, heterozygosity, structure, whole, genome, sequencing, data
798 days ago
- Darwin-WGA, is the first hardware accelerator for whole genome alignment and accelerates the gapped filtering stage. Darwin-WGA also employs GACT-X, a novel algorithm used in the extension stage to align arbitrarily long genome sequences using a small on-chip memory, that provides better quality ...
Tags: Darwin-WGA, Co-processor, Increased, Sensitivity, Whole, Genome, Alignments, High, Speedup
1847 days ago
- MUM&Co is able to detect:Deletions, insertions, tandem duplications and tandem contractions (>=50bp & <=150kb)Inversions (>=1kb) and translocations (>=10kb)
Tags: MUM&Co, simple, bash, script, Whole, Genome, Alignment, information, MUMmer, detect, variants
737 days ago
Entire Human Genome Sequencing !
Cost-effective whole human genome sequencing has revolutionized the landscape of genetic research and personalized medicine by making comprehensive genetic analysis accessible to a wider population. Through advancements in sequencing technologies, such as next-generation sequencing (NGS), costs h...Tags: Whole, Genome, Human, Sequencing
31 days ago
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