BOL

Count the total number of lines in a file. my $total=@{[<INFILE>]}; #Perl #Count #Number #Total #File

Patent-free Research!!http://www.nature.com/nm/journal/v20/n6/full/nm0614-564.html #OpenSource #Research

Role of small microRNA in antidepression treatment!! http://www.nature.com/nm/journal/vaop/ncurrent/full/nm.3582.html#methods #miRNA #Microarray #qPCR #Human

http://phinch.org/ #Visaulisation

Assemble short reads http://ged.msu.edu/angus/tutorials/short-read-assembly.html #Tutorial #ABySS #Bacteria #Reads #Assembly #Genomics #NGS

NGS analysis pipeline http://www.egr.msu.edu/changroup/Protocols/NGS%20analysis%20example%20of%20a%20pipeline.html #Pipeline #NGS #Genomics #Tutorial

FDA Applies Genome Sequencing !! http://www.foodsafetynews.com/2014/06/fda-applies-genome-sequencing-in-outbreak-investigation/#.U5G5zvmSych #FoodOmics

Small RNA Determines Sex !! http://www.biotechniques.com/news/Small-RNA-Determines-Sex/biotechniques-352151.html#.U5G2tPmSycg #RNaOmics #piRNA

Sheep genome decoded!! http://www.sciencemag.org/content/344/6188/1168.abstract #Omics #Seq

Genetic sequencing traced root of MERS!! http://time.com/2827822/it-looks-like-camels-actually-can-transmit-mers-to-humans/ #HealthOmics

http://www.nbcnews.com/health/health-news/boys-mysterious-infection-cured-after-dna-sequencing-n122871 #HealthOmics

Remove the blank space from a fasta file. perl -nlwe 'tr/ //d; print if length' fileName #Delete #Space #Fasta #Perl #Oneliner

Remove N from a fasta file. Go to vi editor, type :%s/N\{25,\}//g and press enter. #Vim #vi #N #Replace #Fasta

perl -nle 'if (/^>/) { $sl = 0; print; next } next if ($sl >= 200); $_ = substr($_, 0, 200-$sl) if ($sl + length($_) > 200); $sl += length($_); print;' file.fa >new.fa #Perl #Extract #Fasta

rename all *.txt as *.bak: find . -name "*.txt" | sed "s/\.txt$//" | xargs -i echo mv {}.txt {}.bak | sh #Linux #Rename #Oneliner