BOL

Beginner’s #guide to #comparative #bacterial genome #analysis using #next-generation sequence data https://microbialinformaticsj.biomedcentral.com/articles/10.1186/2042-5783-3-2

Find a pattern in first 7 characters of reads. bioawk -c fastx 'substr($seq,0,7) == $TAG { print }' reads.fq.gz #Reads #NGS #Extract #Pattern

You can use the df command to know the free space in the disk: $ df -h . #df #Linux #List #Free #Space

To know the size of the directory in current folder. $ du -sh * #Size #Directory #List #Space #Linux #du

Learning resources http://archive.ics.uci.edu/ml/index.php #Learn #MAchine #Learning #AI #UCI

Perl basics http://perldoc.perl.org/perlrequick.html #Perl #quick

Bioinformatics scientist opening at http://www.ccmb.res.in/positions/regular/notif_2_2017/CSIR-CCMB_sci_advt_02_2017.pdf #Bioinformatics #Scientist #CCMB

WalkIn at JIPMER http://jipmer.edu.in/wp-content/uploads/2017/06/Multicentric-Recruitment-on-website.pdf #WalkIn #JIPMER

Remove four beginning characters from each line of the file. $ sed 's/^....//' genbank.txt #Remove #Sed #Text

Understanding #K-mean #clustering in #Hindi https://www.youtube.com/watch?v=YWgcKSa_2ag

Understanding BLAST scores http://homepages.ulb.ac.be/~dgonze/TEACHING/stat_scores.pdf #blast #score

Count the number of bases in fasta file. grep -v ">" file.fasta | wc | awk '{print $3-$1}' #Fasta #Count #Bases

Understanding BitScore https://www.ctu.edu.vn/~dvxe/Bioinformatic%20course/lectures/scores.pdf #Blast #Bit #BitScore

Append the string to fasta header. $ sed 's/>.*/&_Bacteria/' foo.in > out.fasta #Sed #Fasta #String #Append

https://hackernoon.com/make-pharma-great-again-with-artificial-intelligence-some-challenges-50e91ea9988d #Pharma #Hackernoon #Challenges #AI