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Jit
@jit.aber
Jit
Enthusiast computational biologist with business dream !!!
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The Wire
Jit
Jit's wire posts
Jit
@jit.aber
Thread
By
Jit
1930 days ago
samtools view -Sb pilonCor_round1.fasta.out.sam | samtools sort -m 4G -@ 40 -o pilonCor_round1.fasta.out.sorted.bam - && samtools index -@ 40 pilonCor_round1.fasta.out.sorted.bam
#SAM2BAM
Jit
@jit.aber
Thread
By
Jit
1931 days ago
samtools mpileup -uf reference.nt mapping.bam | bcftools call -c | vcfutils.pl vcf2fq > consensus.fasta
#Genome
#Assembly
#Reference
Jit
@jit.aber
Thread
By
Jit
1935 days ago
Where is genomics going next?
https:/
/
genomebiology.biomedcentral.com/
articles/
10.1186/
s13059-019-1626-2
#Next
#Genomics
#Future
Jit
@jit.aber
Thread
By
Jit
1936 days ago
Genome Information by Organism
https:/
/
www.ncbi.nlm.nih.gov/
genome/
browse/
#!/
overview/
#Genome
#information
#NCBI
Jit
@jit.aber
Thread
By
Jit
1937 days ago
#Database
resources of the National Center for Biotechnology Information
https:/
/
www.ncbi.nlm.nih.gov/
pmc/
articles/
PMC3531099/
#NCBI
Jit
@jit.aber
Thread
By
Jit
1939 days ago
for i in $(ls *.ab1); do convert_trace -out_format scf < $i > ${i%.ab1*}.scf; done
#Convert
#AB12SCF
#SCF
#AB1
Jit
@jit.aber
Thread
By
Jit
1944 days ago
Bioconda packages for bioinformatician
https:/
/
conda-static.anaconda.org/
bioconda/
#conda
#bioconda
#packages
#list
#tools
Jit
@jit.aber
Thread
By
Jit
1947 days ago
Genome assembly tutorial
https:/
/
bioinformaticsdotca.github.io/
high-throughput_biology_2017_module6_lab
#tutorial
#assembly
#tools
#steps
#pipeline
Jit
@jit.aber
Thread
By
Jit
1947 days ago
how to polish a genome assembly
https:/
/
nanopolish.readthedocs.io/
en/
latest/
quickstart_consensus.html
#polish
#nanopolish
#ont
#nanopore
#consensus
Jit
@jit.aber
Thread
By
Jit
1947 days ago
Using R language with Anaconda
https:/
/
docs.anaconda.com/
anaconda/
user-guide/
tasks/
use-r-language/
#R
#Anaconda
#Language
Jit
@jit.aber
Thread
By
Jit
1949 days ago
SLURM how to tutorial at
#slurm
" rel="nofollow">https:/
/
www.genouest.org/
howto/
#slurm
#slurm
#how
#FAQ
Jit
@jit.aber
Thread
By
Jit
1950 days ago
Machine learning/Generic algorithms in R
https:/
/
www.r-bloggers.com/
feature-selection-using-genetic-algorithms-in-r/
#Genetic
#Algorithms
#R
#Code
#GA
Jit
@jit.aber
Thread
By
Jit
1953 days ago
exFat format mount in Linux sudo apt-get install exfat-fuse exfat-utils
#exFat
#Linux
#Mount
Jit
@jit.aber
Thread
By
Jit
1956 days ago
Recommendations for the description of
#sequence
#variants
https:/
/
www.hgvs.org/
mutnomen/
recs.html
Jit
@jit.aber
Thread
By
Jit
1958 days ago
I recommend two technologies: long reads to get the genome right, short reads to get the bases right.
#Genome
#Assembly
#Reads
#LonfReads
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