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Jit
@jit.aber
Jit
Enthusiast computational biologist with business dream !!!
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The Wire
Jit
Jit's wire posts
Jit
@jit.aber
Thread
By
Jit
2120 days ago
Genome assembly
https:/
/
www2.eecs.berkeley.edu/
Pubs/
TechRpts/
2016/
EECS-2016-43.pdf
#Genome
#Assembly
#Tutorial
Jit
@jit.aber
Thread
By
Jit
2121 days ago
#Canu
#assembly
of long reads
https:/
/
canu.readthedocs.io/
en/
latest/
quick-start.html
Jit
@jit.aber
Thread
By
Jit
2121 days ago
Long read extraction
https:/
/
github.com/
rrwick/
Unicycler/
wiki/
Read-extraction
#Reads
#Extractions
#Long
#PacBio
#Ont
Jit
@jit.aber
Thread
By
Jit
2121 days ago
Assembly Conversion
https:/
/
ics.hutton.ac.uk/
tablet/
assembly-conversion/
#Assembly
#Conversion
#NGS
Jit
@jit.aber
Thread
By
Jit
2131 days ago
Machine learning
https:/
/
www.r-bloggers.com/
explaining-black-box-machine-learning-models-code-part-1-tabular-data-caret-iml/
amp/
#machinelearning
#machine
Jit
@jit.aber
Thread
By
Jit
2137 days ago
#Install
#BioPython
$ python2.7 -m pip install biopython $ python3.6 -m pip install biopython $ pypy -m pip install biopython
Jit
@jit.aber
Thread
By
Jit
2138 days ago
http:/
/
qb.cshl.edu/
assemblytics/
#Analysis
#Genome
#Mummer
#Assembly
#Assemblytics
Jit
@jit.aber
Thread
By
Jit
2141 days ago
https:/
/
www.r-bloggers.com/
a-comparative-review-of-the-r-commander-gui-for-r/
amp/
#R
#GUI
Jit
@jit.aber
Thread
By
Jit
2142 days ago
Replace lowercase to N. perl -pe '/^[^>]/ and $_=~ s/[a-z]/N/g' genomic.fna > genomic.N-masked.fna
#Mask
#Lowecase2N
#LowerCase
Jit
@jit.aber
Thread
By
Jit
2142 days ago
Unmask lowercase. perl -pe '/^[^>]/ and $_=uc' genomic.fna > genomic.unmasked.fna
#LowerCase
#Unmask
Jit
@jit.aber
Thread
By
Jit
2142 days ago
http:/
/
education.knoweng.org/
sequenceng/
#learn
#ngs
Jit
@jit.aber
Thread
By
Jit
2149 days ago
Call for applications : Early Career
#Fellowships
in
#Biomedical
#Research
https:/
/
www.indiaalliance.org/
news/
239
Jit
@jit.aber
Thread
By
Jit
2153 days ago
#tBLASTn
#command
line $ tblastn -query Avaga.pep.out.45.fa -db myDB -outfmt 6 -out output_file -evalue 1e-5 -max_target_seqs 1
#Blast
#Protein
Jit
@jit.aber
Thread
By
Jit
2153 days ago
perl -e '$/="\n>"; while (<>) { s/>//g; my ($id, $seq) = split /\n/; print ">$_" if length $seq; }' < all_p_ctg.fasta > all_p_ctg_corrected.fasta
#Convert
#Fasta
#Zero
Jit
@jit.aber
Thread
By
Jit
2157 days ago
perl -pe 's/[^AGTC\n]/N/gi unless m/>/;' /media/urbe/TOSHIBALAB/falconUnzip/SSPACED_P2/scaffolds.fasta > /media/urbe/TOSHIBALAB/falconUnzip/SSPACED_P2/scaffolds_corrected.fasta
#Remove
#Non
-ATCG
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