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Jit
@jit.aber
Jit
Enthusiast computational biologist with business dream !!!
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The Wire
Jit
Jit's wire posts
Jit
@jit.aber
Thread
By
Jit
2026 days ago
Rename the fasta header perl -ane 'if(/\>/){$a++;print ">LR$a\n"}else{print;}' allPacBio_clean.fa > allPacBio_clean_shortName.fa
#fasta
#header
#rename
Jit
@jit.aber
Thread
By
Jit
2030 days ago
Bash scripting cheatsheet
https:/
/
devhints.io/
bash
#Bash
#CheatSheet
#Script
Jit
@jit.aber
Thread
By
Jit
2036 days ago
Bioinformatics online tutorial
https:/
/
www.gvl.org.au/
learn/
#Tutorial
#Online
#Learn
Jit
@jit.aber
Thread
By
Jit
2036 days ago
Bioinformatics tutorial
http:/
/
sepsis-omics.github.io/
tutorials/
#Bioinformatics
#Tutorial
#Learn
Jit
@jit.aber
Thread
By
Jit
2037 days ago
Tab file to FASTA file $ awk '{print ">"$1"\n"$2}' allSeq_tm.txt > allSeq_tm.fa
#Fasta
#Tab
#Convert
#Tab2Fasta
Jit
@jit.aber
Thread
By
Jit
2041 days ago
Machine Learning books
https:/
/
semanti.ca/
blog/
?the-most-important-machine-learning-books
#books
#machine
#learn
Jit
@jit.aber
Thread
By
Jit
2057 days ago
#Mappy
provides a convenient
#interface
to
#minimap2
, a fast and accurate
#C
program to
#align
#genomic
and transcribe nucleotide
#sequences
.
https:/
/
pypi.org/
project/
mappy/
Jit
@jit.aber
Thread
By
Jit
2070 days ago
http:/
/
loupe.10xgenomics.com
#10XGenomics
#10X
#Phase
#Haplotype
#View
Jit
@jit.aber
Thread
By
Jit
2075 days ago
Genome Assembly Cookbook
http:/
/
aidenlab.org/
assembly/
manual_180322.pdf
#HiC
#3D
-DNA
#Juicer
Jit
@jit.aber
Thread
By
Jit
2092 days ago
#Multiline
Fasta To
#SingleLine
Fasta $ awk '/^>/ {printf("\n%s\n",$0);next; } { printf("%s",$0);} END {printf("\n");}' < file.fa
Jit
@jit.aber
Thread
By
Jit
2099 days ago
Long Reads ( pacbio and nanopore) correction
https:/
/
www.pacb.com/
asset_tags/
error-correction/
#PacBio
#Error
#Correction
#LongReads
Jit
@jit.aber
Thread
By
Jit
2106 days ago
cat /etc/*-release
#System
#version
#Linux
Jit
@jit.aber
Thread
By
Jit
2110 days ago
perl -pe '/^>/ ? print "\n" : chomp' LR.fasta | tail -n +2 > out.fasta
#singleLine
#Multifasta
#Multi2Single
Jit
@jit.aber
Thread
By
Jit
2118 days ago
#Remove
#smartbell
from
#pacbio
#removesmartbell
.sh
https:/
/
github.com/
BioInfoTools/
BBMap/
blob/
master/
sh/
removesmartbell.sh
Jit
@jit.aber
Thread
By
Jit
2120 days ago
Scrubbing long reads
https:/
/
dazzlerblog.wordpress.com/
2017/
04/
22/
1344/
#Scrub
#Long
#Reads
#Pacbio
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