BOL

Perl References https://gist.github.com/afair/2402068 #Perl #Reference #Array #Hash

Graph reference genome https://vimeo.com/184983995 #Graph #Reference #Genome #GraphRef

samtools mpileup -uf reference.nt mapping.bam | bcftools call -c | vcfutils.pl vcf2fq > consensus.fasta #Genome #Assembly #Reference

#Mapping #sequencing #reads to a #reference #genome with #Bowtie2: a step-by-step guide https://insidedna.me/tutorials/view/how-to-use-bowtie2-read-mapping

Reference genomics http://www.foodqualitynews.com/Lab-Technology/Bioinformatics-platform-scoops-award #Genomics #Reference

Reference-free Prediction of Rearrangement Breakpoint Reads http://bioinformatics.oxfordjournals.org/content/early/2014/05/28/bioinformatics.btu360.short #Reference #Breakpoint #Reads #Rearrangement

Ragout—a reference-assisted assembly tool for bacterial genomes http://bioinformatics.oxfordjournals.org/content/30/12/i302.short #Genome #Assembly #Reference #Ragout #Bacteria