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Jit
@jit.aber
Jit
Enthusiast computational biologist with business dream !!!
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The Wire
Jit
Jit's wire posts
Jit
@jit.aber
Thread
By
Jit
2396 days ago
Comparison of the two major classes of
#assembly
algorithms: overlap–layout–consensus and de-bruijn-graph
https:/
/
academic.oup.com/
bfg/
article/
11/
1/
25/
191455
Jit
@jit.aber
Thread
By
Jit
2396 days ago
hybrid assembly pipeline for bacterial genomes with Unicycler:
https:/
/
github.com/
rrwick/
Unicycler
#Unicycler
#Hybrid
#Bacteria
Jit
@jit.aber
Thread
By
Jit
2397 days ago
Sort a file with column 2: sort -g -k 2,2 allPacbio.fa.fai > sorted.fai
#sort
#file
#column
Jit
@jit.aber
Thread
By
Jit
2398 days ago
Get the reads in fastq file: awk '{s++}END{print s/4}' file.fastq
#reads
#count
#ngs
#fastq
Jit
@jit.aber
Thread
By
Jit
2399 days ago
De Bruijn graph Tutorial
http:/
/
www.cs.jhu.edu/
~langmea/
resources/
lecture_notes/
assembly_dbg.pdf
#Assembly
#Tutorial
#DeBruijn
Jit
@jit.aber
Thread
By
Jit
2399 days ago
Understanding alignment
https:/
/
www.cs.umd.edu/
class/
fall2011/
cmsc858s/
Alignment.pdf
#Alignment
#Learn
Jit
@jit.aber
Thread
By
Jit
2400 days ago
Genetic algorithms with Python
https:/
/
github.com/
handcraftsman/
GeneticAlgorithmsWithPython
#Python
#GA
Jit
@jit.aber
Thread
By
Jit
2401 days ago
We are still working on to fix some of the missing BOL data. sorry for the inconvenience caused.
#BOL
#Work
#Data
#Missing
#Recover
Jit
@jit.aber
Thread
By
Jit
2425 days ago
Sorry, due to server transfer BOL is facing some difficulties loading data ... we will try to resolve it ASAP.
Jit
@jit.aber
Thread
By
Jit
2489 days ago
Remove duplicated lines from text file. $ awk '!seen[$0]++' allIds
#duplicate
#lines
#remove
#awk
Jit
@jit.aber
Thread
By
Jit
2491 days ago
Reasonably fast method to compute the
#patristic
#distance
between a pair of
#species
in a large tree
http:/
/
blog.phytools.org/
2015/
10/
new-reasonably-fast-method-to-compute.html
Jit
@jit.aber
Thread
By
Jit
2492 days ago
#Phylogenetics
#analysis
https:/
/
bip.weizmann.ac.il/
education/
course/
introbioinfo/
03/
lect12/
phylogenetics.pdf
Jit
@jit.aber
Thread
By
Jit
2499 days ago
Remove unwanted character from fasta file. $ sed -e '/^[^>]/s/[^ATGCatgc]/N/g' file.fa
#IUPAC
#Special
#Character
#Remove
Jit
@jit.aber
Thread
By
Jit
2501 days ago
Print each command before executing? Bash script to print each command before executing. $ bash -x myscript.sh
#Print
#Command
#Bash
Jit
@jit.aber
Thread
By
Jit
2505 days ago
Molecular Recording
https:/
/
www.youtube.com/
watch?v=o8ONjPHLr6s
#DNA
#Recording
#Store
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