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Rahul Nayak
@rahul
Rahul Nayak
A Bioinformatician
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The Wire
Rahul Nayak
Rahul Nayak's wire posts
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2089 days ago
https:/
/
scinapse.io/
#Non
-profit
#academic
#search
#engine
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2103 days ago
Understanding PairedEnd(PE) mapping
https:/
/
davetang.org/
muse/
2014/
07/
24/
getting-started-paired-end-reads/
#PE
#Paired
#End
#PairedEnd
#Mapping
#Map
#Learn
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2103 days ago
du -sh * | sort | grep "G"
#List
size of all the directory
#Size
#List
#Directory
#Linux
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2126 days ago
Useful
#tools
for
#genome
analysis
https:/
/
gigascience.biomedcentral.com/
articles/
10.1186/
s13742-015-0077-2
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2137 days ago
Transcriptome assembly
https:/
/
www.rna-seqblog.com/
tag/
transcriptome-assembly/
#RNA
-seq
#Transcriptome
#Assembly
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2142 days ago
Get unique ids from column 1 in Linux. $ cat output_file | cut -f 1 | sort | uniq > allUniqOUT
#Unique
#Linux
#Cut
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2145 days ago
Genome in a Bottle
http:/
/
jimb.stanford.edu/
giab/
#GIAB
#Genome
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2172 days ago
PacBio Sequencing and Its Applications
https:/
/
www.sciencedirect.com/
science/
article/
pii/
S1672022915001345
#PacBio
#Application
#NGS
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2221 days ago
#Bioinformatics
#scripts
links
http:/
/
enve-omics.ce.gatech.edu/
enveomics/
docs
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2221 days ago
#Split
#multifasta
$ cat hg18.fa | awk '{ if (substr($0, 1, 1)==">") {filename=(substr($0,2) ".fa")} print $0 > filename }'
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2233 days ago
#Extract
all the files from a
#directory
and
#sub
-dir with
#pattern
. $ find TrimmedDir -type f | grep "L_" | xargs -i cp {} .
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2239 days ago
#Convert
#fasta
file to uppercase/lowercase, without altering the annotation line $ awk '{ if ($0 !~ />/) {print toupper($0)} else {print $0} }' name.fasta
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2243 days ago
#Ramalingam
#fellowship
http:/
/
www.dbtindia.nic.in/
wp-content/
uploads/
RAMA-ADvertisement14032018.pdf
#RAMA
#Back2India
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2248 days ago
Get the sequences using coordinates in bed file. $ bedtools getfasta -fi input_file.fa -bed regions_file.bed
#Bed
#Extract
#Sequence
#bedtools
Rahul Nayak
@rahul
Thread
By
Rahul Nayak
2256 days ago
Bioinformatics job opening at NIB, Noida
http:/
/
nib.gov.in/
career/
advertsisement.pdf
#Job
#NIB
#Noida
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