Results for "Duplications"
Blogs
Structural variation: the hidden genomic treasure
...hing. CNVs are closely related to segmental duplications (SDs): SDs can stimulate the...riants (SVs) such as deletions, insertions, duplications, inversions and translocation...translocations, and unbalanced ones such as duplications and deletions (copy number va...2706 days ago
- ...ding not only rearrangements but also gene insertions, deletions and duplications. MLGO can be used to infer a...rts a fairly general model of genomic evolution (rearrangements plus duplications, insertions, and losses of ge...
2533 days ago
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Bookmarks
mrFAST: Micro Read Fast Alignment Search Tool
...d mapper that is designed to map short reads to reference genome with a special emphasis on the discovery of structural variation and segmental duplications. mrFAST maps short reads with...2934 days ago
- ...V ) mapping and SV calling from the mapping result. PRISM is able to detect small insertions and abitrary size deletions, inversions and tandom duplications with the direction of discord...
2706 days ago
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Top-level pages
Tools for Searching Repeats And Palindromic Sequences
...ter characterized and placed into five categories: Simple Repeats - Duplications of simple sets of DNA bases (...ally found at the centromeres and telomeres of chromosomes these are duplications of more complex 100-200 base...2214 days ago
News
- ...expensive. Multi-gene panel based on NGS (next-generation sequencing) can allow us to detect all types of mutations, including large deletions/duplications, thus allowing us to perform...
2242 days ago
ResearchLabs posts
- ...aired-end mapping (or read pair analysis) based on abnormally mapped pairs of clone ends; (ii) read-depth analysis, which detects deletions and duplications through analysis of the read...
2996 days ago
- The Rogers lab studies evolution of genome structure. We explore the ways that complex mutations like duplications, deletions, rearrangements, and retrogenes can create new genetic mater...
1759 days ago
Video
Bioinformatics -- Understanding of living systems through information science
...e changes through sudden mutations. Additionally, at the genome level, mutations called rearrangements, such as inversions, transpositions, and duplications, occur. The genome comparis...3920 days ago
Bio-Scripts
Perl script to run SATSUMA in loop !
#!/usr/bin/perl -w use strict; use File::Temp qw(tempfile); # Usage perl 1by1.pl for SATSUMA analysis # User need to set the reference multifasta file name here m...2143 days ago
Tags
Structural variation: the hidden genomic treasure
Genome re-sequencing projects have revealed substantial amounts of genetic variation between individuals extending beyond single nucleotide polymorphisms (SNPs) and short indels. Structural Variations (SVs) and Copy Number Variations (CNVs) are a major source of genomic variation. However, compar...Tags: Bioinformatics, Chromosome, Genome, NGS, Structure Variation, Deletions, Insertions, Duplications, Inversions, Translocations
2706 days ago
Comments
Comment on "Genome in a Bottle (GIAB) Consortium"
..., as well as calls in difficult genomic contexts (e.g., homopolymers/tandem repeats and difficult-to-map regions like pseudogenes and segmental duplications). GIAB is also explorin...1563 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
Align Synteny - Beginning from completed or draft genomes, find shared syntenic regions and align them quickly while accounting for inversions, rearrangements, and duplications. http://www2.decipher.codes/AlignSynteny.html1977 days ago
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