Results for "Gene"
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The GO knowledgebase is composed of two primary components: the Gene Ontology (GO), which provides the logical structure of the biological functions (‘terms’) and their relationships to one another, manifested as a directed acyclic graph the corpus of GO annotations, evi...Tags: Gene, Ontology, Consortium
1932 days ago
- GeneMates is an R package implementing a network approach to identify horizontal gene co-transfer (HGcoT) between bacteria using whole-genome sequencing (WGS) data. It is particularly useful for investigating intra-species HGcoT, where presence-absence status of acquired genes is usually confound...
Tags: GeneMates, R, package, Horizontal, Gene, Co-transfer, Bacteria, Associations, Population, Structure
1511 days ago
- WEGO (Web Gene Ontology Annotation Plot) is a simple but useful tool for visualizing, comparing and plotting GO (Gene Ontology) annotation results. As the GO vocabulary became more and more popular, WEGO was widely adopted and used in many researches. Therefore we have updated WEGO 2.0 in 2018. H...
Tags: WEGO, Web, Gene, Ontology, Annotation, Plot, tool, visualizing, plotting, GO, Gene, Ontology, annotation, results
1475 days ago
ShinyGO v0.61: Gene Ontology Enrichment Analysis + more
2/3/2020: Now published by Bioinformatics. 11/3/2019: V 0.61, Improve graphical visualization (thanks to reviewers). Interactive networks and much more. 5/20/2019: V.0.60, Annotation database updated to Ensembl 96. New bacterial and fungal genomes based on STRING-db! Just paste your gene l...Tags: ShinyGO, Gene, Ontology, Enrichment, GO, Analysis
1423 days ago
Predict Gene Ontology with sequences !
PANNZER (Protein ANNotation with Z-scoRE) is a fully automated service for functional annotation of prokaryotic and eukaryotic proteins of unknown function. The tool is designed to predict the functional description (DE) and GO classes. PANNZER2 processes bacterial proteomes in minutes and ...Tags: Predict, Gene, Ontology, Sequences, GO
1388 days ago
G-NEST: The Gene NEighborhood Scoring Tool
The Gene NEighborhood Scoring Tool (G-NEST) combines genomic location, gene expression, and evolutionary sequence conservation data to score putative gene neighborhoods across all window sizes. Primary author of final code = William F. Martin. Example data files are in the separate repository.Tags: G-NEST, Gene, NEighborhood, Scoring, Tool
1308 days ago
- This tool detects statistically validated events of gene acquisitions with the help of the T-REX algorithm by comparing individual gene tree with NCBI species tree. In between the steps, the workflow decides about handling paralogs, filtering outputs, identifying Megavirale specific OGs, detectio...
Tags: MimiLook, Phylogenetic, Workflow, Detection, Gene, Acquisition, Major, Orthologous, Groups, Megavirales
837 days ago
AGORA: Algorithm for Gene Order Reconstruction in Ancestors
AGORA stands for “Algorithm for Gene Order Reconstruction in Ancestors” and was developed by Matthieu Muffato in the DYOGEN Laboratory at the École normale supérieure in Paris in 2008. // | | // ) ) // ) ) // ) ) // | | //__| | // // / ...Tags: AGORA, Algorithm, Gene, Order, Reconstruction, Ancestors
787 days ago
