Results for "Gene Ontology"
Blogs
Tools to detect synteny blocks regions among multiple genomes
The synteny block (which etymologically means “on the same...ether it encompasses multiple genes, an area containing single g...define synteny as “Two genes which occur on the same chro...ertain evolutionary important genes play an important role in ev...s conservation of large-scale gene ord...2601 days ago
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by trained curators or generated automatically. GO is des...biological terms and and all genes that are instances of these terms. These Gene Ontology has become an extremely u...3701 days ago
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Bookmarks
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to anal...assembling genomes, comparing DNA and protein sequences, predicting genes, finding regulatory motifs, analyzing gene exp...
3936 days ago
Should you get sequenced? Not all bad genes predict disease
“What we really don’t know yet is whether the predictive aspects of the genome are going to turn out...ne we are fighting against this society-wide misconception that having the bad gene mea...3893 days ago
- +177 more Bookmarks
Files
- Liver cancer is third leading cause of deaths and fourth most frequent occuring cancer worldwide. The...small RNA molecules known to inhibit mRNA expression of particular gene by binding improperly to 3'UTR region of a gene and...
3552 days ago
- SPAdes—St. Petersburg genome Assembler—was originally developed for de novo assembly of genome sequen...s and transcriptomes as well as assembly of putative plasmids and biosynthetic gene clu...
815 days ago
Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3935 days ago
Pages
Bio++ : C Language libraries for your biological need
C has always been a language that never attempts to tie a programmer down - it...formatics, including sequence analysis,phylogenetics, molecular evolution and population genetics.Bio++ is designed in an e...decomposition, inversion, etc.Random number generati...3938 days ago
BioRuby :Ruby packages for biologist
...o twice or more lines of other languages because of Ruby's extremely high descriptive power. Classes for Multiple alignment (Bio::Alignment), Gene Ontology(Bio::GO), PDB (Bio::PDB), FAN...3938 days ago
- +7 more Pages
Top-level pages
- "Bioinformatics is a science of biological predictions and analy...th System's Symphony of Life: Genetics & Medicine Web site."...the information stored in the genetic code, but also experimenta...3D structure alignment, phylogenetic tree construction, predict...ide polymorphisms to hunt for genetic...
3938 days ago
- Data mining, the extraction of hidden predictive information from large...y, it’s becoming more common to generate reams of data then ask so...ore, people working in bioinformatics generally come from computer scien...s: Tools for Mining and Applying Genetic...
3937 days ago
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Wire posts
News
Lateral Gene Transfer Is Enriched in Cancer Samples
There has been always a confusion on cancer and bacteria relationship. This is the first paper which shows lateral gene transfer causes cancer. Find more at http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.10031073931 days ago
R package for visualising GO enrichment
An R package that visualizes the GO enrichment results as word clouds and arranges them together with figures of...ots for analyses such as differential expression or clustering, where for each gene lis...3931 days ago
- +34 more News
Opportunity posts
Structural polymorphism analysis from NGS data
The LabEx BASC (Biodiversity, Agroecosystems, Society, Climate), a network of 13 labor...ster, is seeking a bioinformatician to analyze Next Generation Sequencing (NGS) data a...k between sequence variation, functional variation, gene/pro...3939 days ago
- van Noort Group is looking for PhD fellows We currently access an unprecedented kno...his young computational systems biology group is to generate biological sense from the...will be exploited to better understand two complex genetic...
3939 days ago
- +48 more Opportunity posts
ResearchLabs posts
The Institute for Molecular Bioscience (IMB), Bailey Lab
Pattern recognition and computational biology MEME Suite software development; gene expression; mathematical modelling; gene regulation and transcription Specialization: Pattern recognition and modelling in computational biology Link @ http://www.imb.uq.edu.au/tim-bailey3939 days ago
- Statistical functional genomics in experimental medicine The genome projects and the accelerated development of...cal backgrounds. Research Area: Linear models for microarray data Digital gene exp...
3939 days ago
- +32 more ResearchLabs posts
Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, n...ak khoj Munna Bhai Promoter Gene se Genome tak. Maine BLAST k...jayenge Raju ban gaya Genefinder. Har Ligand jo dock ka...BLAST To Hona Hi Tha !! Meri Gene Tumhare Paas Hai Aao Databas...Maine Bhi ClustalW Kiya Hai GeneScan...3909 days ago
- 1. A futuristic computational biology student was told to write "It is in my gene!!!" on the board 100 times as a...$count++) { print "It is in my gene!!!";}I guess, he is gonna to...; $startGene=$1; &n...sked the bartender:CREATE TABLE gene IF...
3692 days ago
Video
How Genes are Regulated: Transcription Factors
Each cell in our body inherits the same master copy of DNA, but different cell types u...erently. Transcription Factors help influence which genes are used in which cell. Unde...model their binding to DNA and their regulation of gene exp...3885 days ago
DNA is packaged in a chromosome experiment
For more information, log on to- http://shomusbiology.weebly.com/ Download the study materials here-...eates an added layer of regulatory control, which ensures correct gene expression. Nucleosomes are thought to carry epigenetica...3867 days ago
- +10 more Video
Bio-Scripts
Python script to download covid genome !
#!/usr/bin/env python3 # these are the publicly available "complete" sequences # https://www.gisaid.org...len(seqs)) from Bio import Entrez allseq = {} for x in seqs: if 'gene-region' in x and x['gene-reg...1127 days ago
Parse a genbank file using regular expressions
#! /usr/local/bin/perl -w $genbank = "genbank_file.txt"; open (GENBANK, $genbank) || die "cannot...GANISM\s*)(.*)/) { print "Organism: $2\n"; } elsif(/(gene)(\s*)(\d*)(\.\.)(\d*)/) { print "Gene len...2908 days ago
- +14 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
Dr Altan Kara is a Bioinformatics specialist at the faculty of Gene Engineering and Biotechnology Institute at T...it based on this profile. Alterations in the gene, transcript, protein, and met...ou will be retired, what would you tell next generati...2353 days ago
Groups
Our research interest falls in the broad field of bioinformatics and, more specifically into Computational S...s CGH (Comparative Genomic Hybridization) microarrays Computational genetics Candidate gene pri...3934 days ago
This group is being designed to cover some of the common algorithms underlying the following fundament...assembling genomes, comparing DNA and protein sequences, predicting genes, finding regulatory motifs, analyzing gene exp...3893 days ago
Tags
List of gene ontology software and tools
The Gene Ontology (GO) is a set of associations from biological phrases to specific genes that are either chosen by trained curators or generated automatically. GO is designed to rigorously encapsulate the known relationships between biological terms and and all genes that are instances of these ...Tags: GO, Gene, Ontology, Gene Ontology, Enrichments, Pathway, Annotation
3701 days ago
Published: GeneSCF: a real-time based functional enrichment tool with support for multiple organisms
GeneSCF is more reliable compared to other enrichment tools because of its ability to use reference functional databases in real-time to perform enrichment analysis. It is an easy-to-integrate tool with other pipelines available for downstream analysis of high-throughput data. More importantly, G...Tags: Enrichment analysis, KEGG, Gene Ontology, REACTOME, pathways, cancer enrichment, Functional annotation, Gene enrichment
2776 days ago
Comments
- Gene Set Clustering based on Functional annotation (GeneSCF) ---------------------- 1...se KEGG (01/January/2017) and Gene Ontology (January 2017), the GeneS...Some organism from Gene Ontology was not supported The ab...
2652 days ago
Comment on "List of gene ontology software and tools"
...published TopoICSim: a new semantic similarity measure based on gene ontology provide a new view on&nbs...robust performance for quantification of semantic similarity between genes and proteins based on GO annotat...2823 days ago
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