Install BLAST in Ubuntu/Linux and Window !
#On ubuntu sudo apt-get install ncbi-blast+ #Ubuntu Conda installation conda install -c bioconda blast #Windows installation First: Download ftp://ftp.ncbi.nlm.nih.gov/blas...1138 days ago
Perl program to implement sliding window !
#!/usr/bin/perl -w my $filename = 'data.txt'; open(my TR, '2906 days ago
Clump Finding Problem Solved with Perl
...t "$name " if $myHash{$name} == $clump; } kmerMatch ($string, $subStr, $kmer); sub kmerMatch { #Check the exact matching kmers with sliding window my ($string, $myStr, $kmer)=...2325 days ago
Plot custom gene density with R
library(karyoploteR) pp2241 days ago
1516 days ago
Pack a perl program with their dependencies on Ubuntu !
...// (adsbygoogle = window.adsbygoogle || []).push({...4;raag Linux advantagesBy Rahul Agarwal 46 days ago linuxwindows https://www.forbes.c...1503 days ago
Print in terminal with python !
#!/usr/bin/env python import time import curses def pbar(window): height, width = window.getmaxyx() for i in range(10): window.addstr(height -1, 0, "[" + ("=" * i) + ">" + (" " * (10 - i )) + "]") window.refresh() time.sleep(0.5) curses.wrapper(pbar)970 days ago
Tadpole is 250x faster than SPADes assembler !
...t bases, for tail. deadzone=0 (dz) Do not try to correct bases within this distance of read ends. window=12 (w) Length of window to use in reassemble mode. w...968 days ago
942 days ago
R script to covert and export html page to png
# Library library(streamgraph) # Create data: data410 days ago