Results for "SAM tool"
Users
Skills: SAM tool581 days ago
Blogs
Five points for bioinformatics software/tools
...and cons of both kind of software/tools and try to assist (Hmmm not...s. The best part about open source tools/software is that they’...cian says “if you can do the same thing with commercial softwar...entirely wrong. Using proprietary tools does not absolve you of the...3699 days ago
- In comparative genome analysis work, we usually compar...y comparing genomes of multiple amniote species. The tool removes the burden of manuall...hine:$ cd /SourceCache/jpeg-6b/src$ cp /usr/share/libtool/config/config.sub .$ cp /usr/...
3931 days ago
- +22 more Blogs
Bookmarks
- Bioinformatics is developing very rapidly. With new tools and software it is, now a days, easy to analyse the large scale g...ics datasets. But we need to understand the background of software/tool to better explain the data co...
3936 days ago
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignm...erformance of DAVI against existing state-of-the-art tool sets and found that its accuracy and performance is comparable to existing tools used for bench-marking. We f...1137 days ago
- +296 more Bookmarks
Files
Bioinformatics approach to Boar Taint
...oar taint levels. Resequencing of a total of 47 samples belong to Norwegian Landr...rage coverage. Short reads generated from these samples mapped to Sus Scrofa...7 with the aid of FreeBayes , a variant caller tool. A final list of SNPs was pre...3780 days ago
Statistics Using R with Biological Examples
This book is a manifestation of my desire to teach resea...se covers and to introduce the utilization of R as a tool for analyzing their data. My...ate the great potential statistics has to offer as a tool to answer biological question...2521 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...open-source, freely available tool that automatically downloads,...burdens of data preparation. SAMMate 2.7.4 / assemblySAM 1.1 &n...e EstimationConPADE is a tool used to estimate contig ploid...using either a model-based or sampling-based simulation. SIS &n...2677 days ago
Awesome perl frameworks, libraries and software - PART 2
...kensanata/hex-mapping - Tools to work with hex maps for ro...te any executable file in the same way CGI does, the second one...into C code chrisa/perl-Net-SAML2 - Perl Net::SAML2 modul...Perl application programming toolkit abh/colobus - Perl N...2485 days ago
- +2 more Pages
Top-level pages
- "Bioinformatics is a science of biological...pment, or application of computational tools and approaches for expanding...the development and implementation of tools that enable efficient access...puter has become an essential research tool. Three key areas are the org...
3938 days ago
- ...ta mining is becoming an increasingly important tool to transform this data into...ausal Data Mining in Bioinformatics by Ioannis Tsamardinos: http://www.forth....f Bioinformatics and Medical Informatics: Tools for Mining and Applying Gene...
3937 days ago
- +45 more Top-level pages
Wire posts
News
BEReX : Biomedical Entity-Relation eXplorer
BEReX is a new biomedical knowledge integration, search, and exploration tool. BEReX integrates eight popular data...3831 days ago
Update Genome Workbench 2.7.15 released
NCBI Genome Workbench is an integrated app...ome Workbench is built on the NCBI C++ ToolKit and uses cross-platform AP...at NCBI and makes use of the NCBI C++ ToolKit. The C++ ToolKit provides...of plain GI numbers Mac OS: improved tooltips for toolbar buttons Phyl...3712 days ago
- +16 more News
Opportunity posts
"Advances in Molecular Dynamics of Biomolecules" December 3-4, 2013 @ JNU
The extensive growth of computational power and resources over the last two decades...he molecular level. Molecular Dynamics (MD) simulations have been an invaluable tool in elucidating the structural...3868 days ago
Research Assistant @ NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES
NATIONAL BUREAU OF ANIMAL GENETIC RESOURCES Near Basant Vihar G.T. Road Bypass P....sponsibilities: To help the PI for Beta testing and development of the SanGenix Tool for NGS data. Essential Qu...3797 days ago
- +9 more Opportunity posts
ResearchLabs posts
- PIT Bioinformatics Group solves problems in bioinformati...and computational biology. Recent developed online tools: - Budapest Reference Con...aVizu: Chart visualization for metagenomics analysis tools AMPHORA2 and AmphoraNet. -...
3237 days ago
Fun
Bioinformatician become producer/director !!!
If a Bioinformatician starts producing Hindi Bollywood movies, names will be like t...ne Tumhare Paas Hai Aao Database Search Kare Bioinformatician No.1 Mera Naam Tool Developer Hum Apke Genome Me...3910 days ago
Video
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3899 days ago
- http:--www.biotechnology.jhu.edu- Tutorial for PSI-BLAST, an extension of BLAST that uses matrix algebra. BLAST is a cornerstone bioinformatics tool at NCBI. BLAST is the Basic Local Alignment Search tool and will protein and DNA sequences that are related to a sequence that the user provides.
3887 days ago
- +4 more Video
Bio-Scripts
Palindrome Simulation commands !
...lindromeSimulated.fa 3319 ~/Tools/art_bin_MountRainier/art_illumina -ss MSv3 -sam -i allPalindromeSimulated.fa...-s 10 -o paired_dat 3320 ~/Tools/art_bin_MountRainier/art_illumina -ss MSv3 -sam -i allPalindromeSimulated.fa -...PE.fasta 3326 cd masurca; ~/Tools/MaSuRCA-3.2.3/bin/masurca si...1727 days ago
Bash script to convert SAM to BAM visualization ready
samtools view -bS file.sam | samtools sort - file_sorted samtools index test_sorted.bam test_sorted.bai2174 days ago
- +19 more Bio-Scripts
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...lem and by using bioinformatics tools this can be easily achieved...ymph node metastasis, and blood samples taken from the same patient and the reflection of...is, it provides lots of useful tools for comprehensive analysis a...ny will be developing effective tools to eliminate manipulated dat...2353 days ago
Groups
With sudden exposion of big data in life sciences , now there are many companies wa...companies or commercial actvities which involve bioinformatics as one of their tool to discover new treatment or...2301 days ago
Tags
- A computational biologist with business in mind ;)
Skills: Bioinformatics, R, Perl, Java, SAM tool
581 days ago
Comments
Comment on "Sibelia: A comparative genomics tool"
...numbers of sequences (in the same order as they apper in the i...eny block. Copies having the same number in the "tag" field (l..."stripes" consisting of the same synteny blocks. For example,...eration and Genome Comparison Tool" (poster), WABI 2012 http://...1276 days ago
- ...from FastQfiles, BAM or SAM format. This tool provides an overview to info...a. It also includes few other tools, which are helpful in NGS da...uniformity. The input can be SAM, BAM, FASTA, BED files or Chro...t phases of the process. This tool evaluates unmapped, poorly an...
2128 days ago
