Results for "Short"
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Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of con...ome sequence from a large number of short sequencing reads. SPAdes (St....ler) is a popular software tool for short-read assembly. Here are the g...These are the general steps for short-read assembly using SPAdes. H...407 days ago
- ...e of them: ART: The ART (short for Artificial Read Simulator...wgsim is another widely used short read simulator that generates...ee download. PIRS: PIRS (short for Profile-based Illumina pa...st a few examples of the many short read simulators available for...
407 days ago
Comment on "Short-read assembly using Spades !"
...SPAdes (St. Petersburg genome assembler) is a popular tool for short-read assembly. It can assembl...sequencing platforms. Here is a brief overview of how to use SPAdes for short-read assembly: Install S...412 days ago
Comment on "Letter of motivation for bioinformatics applicants !"
Any Motivation Letter should consist of a short intro defining the program you would like to get. First, state a clear objective of your future task and the reasons for pi...1212 days ago
Comment on "Sibelia: A comparative genomics tool"
.... And it may lose some small synteny blocks (shorter than 15 000 BP), while "fine" option produces more blocks (but shorter) and their coverage is wor...ter. Although the files exist only for a very short period of time, they can be q...1276 days ago
Comment on "Important Journals, Blogs and Forums for Bioinformaticians"
Biology Direct journals accept short notes/ application notes https://biologydirect.biomedcentral.com/submission-guidelines/aims-and-scope1333 days ago
Comment on "AutoDock Vina: an open-source program for doing molecular docking."
AutoDockFR (or ADFR in short) is a protein-ligand docking program developed in the Sanner laboratory at Scripps Research under the AutoDock umbrella. https://ccsb.scripps.edu/adfr/1413 days ago
Comment on "Genome in a Bottle (GIAB) Consortium"
...l Alliance for Genomics and Health Benchmarking Team:Benchmarking tools, Manuscript, GitHub Sequencing Data:Data and analyses from most short, linked, and long read sequen...1551 days ago
Comment on "List of Bioinformatics and Computational Biology Journals"
You can also bioinformatics tools at https://www.journals.elsevier.com/information-and-software-technology/short-communications/information-and-software-technology-now-publishing-short-com2065 days ago
Comment on "HALC: High throughput algorithm for long read error correction"
...ds in FASTA format. Contigs assembled from the corresponding short reads in FASTA format. The initial short reads in FASTA format (only f...;short_reads.fa and then cat right_reads.fa >>short_reads.fa). Using Align...2083 days ago
