2860 days ago
Genome Assembly Tools and Software - PART1 !!
...revolutionary bioinformatics software for automatic DNA sequence as...cs. Rnnotator is an automated software pipeline that generates trans...ome Data. Trans-ABySS is a software pipeline for analyzing ABySS-...Contiguity is interactive software for the visualization and man...2677 days ago
Awesome perl frameworks, libraries and software - PART 1
...p;- Collection of plugins for softwares compatible with Nagios plugi...- SailAlign is an open-source software toolkit for robust long speec.../blawd - Simple Blogging Software in Perl, similar to blosxome...messages Perl-Toolchain-Gang/Software-License - perl represent...2480 days ago
Alignment-free sequence comparison tools available for next-generation sequencing data analysis
...special type of k-mers) Software (C++) http://www.csbio.unc.e...from NGS data (k-mer based) Software (Python) https://github.com/...PacBio reads, draft genomes) Software (Perl) https://github.com/wa...prehensive sequence database Software (C++) https://ccb.jhu.edu/so...2362 days ago
Single Cell RNAseq data analysis tutorial !!
...l RNA-seq data A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor SCell: single-cell RNA-seq analysis software https://github.com/diazlab/S...2342 days ago
Tools for bacterial whole genome annotation
...for improving the quality of genome assemblies created via an assembly software. PAGIT compiled four tools: (...errors in consensus sequences and; (iv) RATT for help annotation. The software was mainly created to analyze...2323 days ago
List of visualization tools for network biology
...oscape.org/ Dizzy Chemical kinetics stochastic simulation software http://magnet.systemsbiology.net/software/Dizzy/ DyCoNet Gephi plugin...nality reduction algorithms https://www.broadinstitute.org/software/spectralnet Tulip Ena...2279 days ago
List of visualization tools for genome alignments
...etadata http://www.bcgsc.ca/platform/bioinfo/software/abyss-explorer BamView Geno...ranslation http://www.sanger.ac.uk/resources/software/artemis/ DNannotator ...p://wanglab.ucsd.edu/star/browser SVA Software for annotating and visualizin...2275 days ago
Computational resources for TE discovery and TE detection
...sp; FINDMITE http://jaketu.biochem.vt.edu/dl_software.htm HMMER http://hmmer.jane.../s7 LTR_par http://www.eecs.wsu.edu/~ananth/software.htm MAK http://wesslerclust...tml SMaRTFinder http://bioinf.dimi.uniud.it/software/software/smartfinder Tandem...2265 days ago
Bioinformatics tools to detect horizontal gene transfer (HGT) in genomes
Horizontal gene transfer (HGT), the “non-sexual movement of genetic material between two organisms” , is relatively common in prokaryotes and single-cel...841 days ago