Results for "pipelines"
Users
About me: I am working as a research fellow at Manipal University. Most of my work involves designing pipelines for genomic sequencing data.Interests: Pipelines16 days ago
- About me: PhD student at University of Gothenburg. Most of my work involves designing or benchmarking pipelines for transcriptome and genomic sequencing data related to epigenetics and cancer.Interests: pipelines
1288 days ago
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Blogs
List of bioinformatics workflow management tools !
...scripting language for working with big data pipelines in computer systems of differ...ine stages and linking them together to make pipelines. [ web ] Common Wo...hat simplifies writing parallel and scalable pipelines in a portable manner. [ ...1133 days ago
The 5 reasons to mistakes at bioinformatics work !!!
...can halt your entire project for months. Compilation and running the pipelines in tedious because almost all...same kind of problem with Evolver :( … 4.Folders missing: The pipelines generate lots of data, and we...2097 days ago
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Bookmarks
Next Generation Sequencing (NGS) Tutorials
...eration sequencing http://hmg.oxfordjournals.org/content/19/R2/R227.full.pdf ============================================== NGS data analysis pipelines Detecting and annotating g...3478 days ago
- ...ed Genotyper* FreeBayesEach of these tools takes as its input a BAM file of aligned reads and generates a list of likely variants in VCF format Pipelines are for those who are comfort...
3644 days ago
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Files
- ...well as hybrid assembly from short and long reads (PacBio and Oxford Nanopore). In this article we present protocols for five different assembly pipelines that comprise the SPAdes pack...
815 days ago
Top-level pages
List of generic simulation software/tools/resource with brief description and homepage !!!
.../webdav.tuebingen.mpg.de/ffpopsim/FLUX SIMULATOR The Flux Simulator aims at providing a deterministic in silico reproduction of the experimental pipelines for RNA-Seq, employing a mini...3728 days ago
List of Bioinformatics Software Tools for Next Generation Sequencing
...erforms variant calling an average of 3 times faster than alternative pipelines Annotates genomic data with...nt calling Allows users to create, save, share, or download analysis pipelines for automated and repeatable...2899 days ago
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Wire posts
News
- ...shows comparable speed of more basic parser written in compiled languages as C++ and can be easily integrated into web applications or software pipelines. Find more @ http://www.ncbi...
3880 days ago
- ...s, which may be linked to a high incidence of indels. One thousand indels from this individual's exome, called by one or more of the informatics pipelines, were selected for focused re...
3537 days ago
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Opportunity posts
Structural polymorphism analysis from NGS data
...repetitiveness of complex genomes. The tools will be integrated into pipelines and made available to end-use...ental designs in order to ensure compliance of produced datasets with pipelines requirements. He/she will be...3939 days ago
Special Project Scientist – Sorghum Genomics
...nguages and emerging and evolving software platforms relevant to bioinformatics and computational biology; ability to create new analytical pipelines; experience with handling lar...3629 days ago
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Video
Dr. Ken Buetow: IS & Personalized Medicine Lecture-Part 1
...the earliest studies developing and applying linkage disequilibrium methods as genetic mapping tools. The laboratory also developed methods and pipelines to generate and apply genome-...3861 days ago
Tryst
Tryst with a Bioinformatician # Dr Altan Kara
...have a good biological background in their field to tell if anything when wrong during the process by only looking the output(s) of the employed pipelines/packages/tools. ...2353 days ago
Tags
Awesome bioinformatics pipelines !
A curated list of awesome pipeline toolkits ... https://github.com/pditommaso/awesome-pipelineTags: Bioinformatics, Computational Biology, Toolkit, Pipelines, Tools
2948 days ago
Bpipe - a tool for running and managing bioinformatics pipelines
Bpipe provides a platform for running big bioinformatics jobs that consist of a series of processing stages - known as 'pipelines'. January 20th, 2016 - New! Bpipe 0.9.9 released! Download latest, all Documentation Mailing List (Google Group) Bpipe has been published in Bioinformatics! I...Tags: Bioinformatics, Bpipe, Tool, Manage, Bioinformatics, Pipelines
2896 days ago
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Comments
Comment on "Nextflow: Data-driven computational pipelines"
A Review of Scalable Bioinformatics Pipelines by Bjørn Fjukstad & Lars Ailo Bongo https://link.springer.com/article/10.1007/s41019-017-0047-z1527 days ago
Comment on "Nextflow: Data-driven computational pipelines"
A collection of high quality Nextflow pipelines https://github.com/nf-core/1527 days ago
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