Results for "sequence"
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Comment on "Short-read assembly using Spades !"
Short-read assembly is the process of constructing a genome sequence from a large number of short sequencing reads. SPAdes (St. Petersburg genome assembler) is a po...406 days ago
Comment on "Tools for Sequence translation !"
Sequence translation is the process of converting a DNA or RNA sequence into its corresponding protein sequence. This is an important step in...lows users to translate a DNA sequence into its corresponding protei...the many tools available for sequence translation. The choice of to...412 days ago
Comment on "Tools for RNA classification"
...useful for identifying non-coding RNA (ncRNA) sequences. Rfam: Rfam is a databa...ector machine (SVM) algorithm to classify RNA sequences. It is particularly useful f...es a combination of HMM-based and comparative sequence analysis approaches to predic...412 days ago
Comment on "Basic command-line to run BLAST"
BLAST compares a query sequence to a database of known sequences and identifies the most similar matches. This is useful for id...en different organisms. BLAST works by breaking down the query sequence into smaller segments, called...412 days ago
Comment on "Basic command-line to run BLAST"
...d program for searching a database of sequences to find those that match a query sequence. Here are the general steps f...and database. Prepare the query sequence: The query sequence should be...Perform the search: Once the query sequence and parameters have been set,...414 days ago
Comment on "Sibelia: A comparative genomics tool"
...ccur exactly once in each input sequence, such blocks are used as inpu...e for analysis. Please note that sequences that do not contain any syn...owing: 1. Seq_id -- ID of the sequence, that the instance belongs to...occur exactly once in each input sequence. This option assumes that al...1276 days ago
Comment on "KAT: a K-mer analysis toolkit to quality control NGS datasets and genome assemblies"
...m, then create a comparison between the combined reads and the assembly. Make sure that you use the flags for canonical hashes for both sequence 1 and 2, as well as 8 th...1328 days ago
- ...sp; Find regex in reference sequence and show matches as an additi...p; Set genome and reference sequence. ...
1511 days ago
Comment on "Complete genome sequence of Wuhan seafood market pneumonia virus is out !"
CBI teams at GenBank®, the Sequence Read Archive (SRA), NCBI Virus, and BLAST co...dicated BLAST search page for Betacoronavirus sequences that includes the outbreak data. As always, we welcome new sequence data submissions.1543 days ago
Comment on "RGFA: powerful and convenient handling of assembly graphs"
The Graphical Fragment Assembly (GFA) is a proposed format which allow to describe the product of sequence assembly. This gem implements the proposed specifications for the GFA format described under https://github.com/GFA-spec/GFA-spec/blob/master/GFA-spec.md as close as possible.1558 days ago
