Results for "tools !"
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Comment on "Short-read assembly using Spades !"
...ases. This step can be performed using various tools such as Trimmomatic or FastQC...f the assembled genome. This can be done using tools such as QUAST or BUSCO. These...parameters used for SPAdes and the evaluation tools may vary depending on the spe...406 days ago
- There are several tools available for short read simulators that are widely used in bioinformatics research. Here are some of them: ART: The ART (short for A...
406 days ago
Comment on "Tools for Sequence translation !"
...mic and transcriptomic data. There are several tools available for sequence transl...This is a Python library that provides several tools for bioinformatics analysis,...is a desktop application that provides several tools for sequence analysis, includ...411 days ago
Comment on "Tools for Differential expression analysis"
...y expressed between two or more conditions or groups. There are several tools available for performing diff...differential expression. These are just a few examples of the many tools available for differential ex...411 days ago
Comment on "Tools for RNA classification"
There are several tools available for RNA classification, each...s and limitations. Here are some commonly used tools: Infernal: Infernal is a...s approaches to predict tRNA genes. These tools can be used individually or i...411 days ago
Comment on "Tools to detect synteny blocks regions among multiple genomes"
...on: Annotate the genes in each genome using gene prediction software or tools such as MAKER. Identify orth...ologous genes: Identify the orthologous genes between the genomes using tools such as OrthoFinder or OrthoM...414 days ago
Comment on "ncbi-datasets-cli -- Quickstart: command line tools !"
(base) [jnarayan@hn1 TOOLS]$ curl -o datasets 'https://ftp.ncbi.nlm.nih.go...00:32 0:00:32 --:--:-- 425k(base) [jnarayan@hn1 TOOLS]$ curl -o dataformat 'https:/...00:23 0:00:23 --:--:-- 558k(base) [jnarayan@hn1 TOOLS]$ chmod +x datasets dataforma...871 days ago
Comment on "List of non-commercial NGS genotype-calling software"
...c Rearrangement IDentification Software Suite. [ paper-2017 ]smoove – structural variant calling and genotyping with existing tools, but,smoothly.1133 days ago
Comment on "How to install Perl modules manually, using CPAN command, and other quick ways"
...activate envname # cpanm is available on either conda-forge or # bioconda, so add conda-forge (or look up # how to set up bioconda if you need tools # for bioinformatics) conda...1172 days ago
Comment on "REAPR: a universal tool for genome assembly evaluation"
Reapr is a tool trying to find explicit errors in the assembly based on incongruently mapped reads. It is heavily based on too low span coverage, or reads mapping...1327 days ago
