Results for "variant"
Users
About me: ...d in using next-generation sequencing technologies like shotgun sequencing, linked reads, and long-read sequencing for whole-genome resequencing, variant calling, and transcriptome as...Skills: Variant Calling1130 days ago
Blogs
Computer simulation of genetic mechanism !!
...w.uhnresearch.ca/labs/tillier/software.htm#3 SimRare Rare variant simulation and analysis tool...for the simulation of the introduction and evolution of (rare) genetic variants. http://simupop.sourceforge....2966 days ago
Structural variation: the hidden genomic treasure
... The most‐studied structural variants are copy number variations (...consequences. Structural variants (SVs) such as deletions, ins...of new detection methods, smaller variants (between 50 and 1000 base pa...iscovery of unbalanced structural variants (copy-number variants) with...2693 days ago
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Bookmarks
DAVI: Deep learning-based tool for alignment and single nucleotide variant identification
DAVI consists of models for both global and local alignment and for variant calling. We have evaluated the performance of DAVI against existing state-of-the-art tool sets and found th...1137 days ago
Next Generation Sequencing (NGS) Tutorials
...ww.isb-sib.ch/training/training-activities-schedule/archive-2013.html Variant Detection (Model organism) Ad...ogle.com/document/pub?id=1CuKkKylVDb03tnN7RSWl5EUzleetn0ctjmvaidPKLxM Variant Detection Introductory tutori...3478 days ago
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Files
Bioinformatics approach to Boar Taint
...steroids which is objectionable to many consumers. Detected functional variant(s) underlying boar taint comp...identified QTL regions on SSC5,13, and 7 with the aid of FreeBayes , a variant caller tool. A final list of...3780 days ago
Discussion topics
- Like in case of plant genomes where nature of genome is too complex and huge in size to accomplish complete de novo assembly by current sequencing technology. What would be alternate solution? Can we live in reference free world?
3935 days ago
Pages
Genome Assembly Tools and Software - PART2 !!
...reads in a SAM file and a set of variant calls in VCF format, HAPCOMPA...ash; Genome Shotgun Assembler and Variant CallerDISCOVAR is a whol...tection and Assembly of Insertion VariantsMindTheGap is a software...a simple error correction, viral variants assembling based on maximum-...2676 days ago
Top-level pages
- ...r phase by merging them.The binary search algorithm is an example of a variant of divide and conquer called...irected graphs, notably by using the simplex algorithm. A complex variant of linear programming is call...
3937 days ago
Useful Publications and Websites for Deep Sequencing Data Analysis
...escribes the RSEM software package] Comparing genomes and assemblies; variant detection Versatile and ope...ata. Krawitz et al, Bioinformatics 26(6):722-9, 2010. Full Text vipR: variant identification in pooled DNA...3770 days ago
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Wire posts
News
Roche has acquired Bina Technologies !!!
...mpany based in California. The biotech’s first product was the Bina Box, a platform for secondary genomic analysis, sequence alignment, and variant calling, but since 2012, it h...3404 days ago
Webinar on 'An integrated RNA and DNA approach to unravel genetic regulation in cancer'
...Mutations in the genome result in diverse transcriptional aberrations that can be missed in a stand-alone WES/WGS analysis. An integration of DNA variant analysis and RNA-Seq analysis...3362 days ago
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Opportunity posts
Human Genome Meeting 2014, Geneva, Switzerland
...the genome sequence of each individual. The biomedical world is now faced with the enormous challenges of assigning pathogenicity to each genomic variant, the functional analysis of t...3870 days ago
Biinformamatics Lead at Google Life Sciences
...in broad kinds of individual and population data. Develop novel platform-level analytical tools for sequence-based assays (assembly, annotation, variant calling and interpretation, p...3479 days ago
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Bio-Scripts
- ...-------------------- Copy Number Variant Discovery:...ad coverage to detect copy number variants. AnnotateIntervals...ted sequencing data. CollectVariantCallingMetrics (Picard)...-------------------------- Short Variant Discovery:...
2066 days ago
- library(vcfR) # Input the files. vcf
2051 days ago
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Tags
You and your friend have similar DNA !!!
New research out of Massachusetts claims that people often choose friends that are similar to them in genetics and they are more accurate than you might suppose. A study published on PNAS http://www.pnas.org/content/111/Supplement_3/10796.full found that people are apt to pick friends who ar...Tags: Bioinformatics, Computational Biology, Genetics, Analysis, Variant, Friends, MIT
3560 days ago
- https://genome10k.soe.ucsc.edu The Genome 10K project aims to assemble a genomic zoo—a collection of DNA sequences representing the genomes of 10,000 vertebrate species, approximately one for every vertebrate genus. The trajectory of cost reduction in DNA sequencing suggests that this project wi...
Tags: Bioinformatics, Computational Biology, Genetics, Sequencing, G10K, Variant, Assembly, Animal
3559 days ago
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Comments
Comment on "Coronavirus Resources !"
...oV-2 Interagency Group (SIG) developed a Variant Classification scheme that defines three classes of SARS-CoV-2 variants: Variant of Interest Var...on https://www.cdc.gov/coronavirus/2019-ncov/variants/variant-info.html951 days ago
Comment on "Calling variants in non-diploid systems"
FreeBayes is widely used for calling variants in diploid systems. However, it can also be used for calling variants in pooled samples where the...tion of FreeBayes to generate frequency-based variant calls as well as some other o...1034 days ago
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