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• • LEGE@lege

  

  LEGE created a new bio-script Python script to convert fastq to fasta 273 days ago
• • LEGE@lege

  

  LEGE bookmarked CGView.js is a Circular Genome Viewing tool 273 days ago

  CGView.js is a Circular Genome Viewing tool for visualizing and interacting with small genomes. This software is an adaptation of the Java program CGView. CGView.js is the genome viewer of Proksee, an expert system for genome...

  https://js.cgview.ca/
• • LEGE@lege

  

  LEGE bookmarked Proksee 273 days ago

  Proksee is an expert system for genome assembly, annotation and visualization. To begin using Proksee, provide a complete genome sequence, sequencing reads or a CGView/Proksee map JSON file. Please Cite the Following Grant JR, Enns E, Marinier E,...

  https://proksee.ca/
• • LEGE@lege

  

  LEGE bookmarked R Package for PCA Analysis 276 days ago

  An R package for performing principal component analysis (PCA) of genomics data. The package performs PCA, generates the publication-ready plots, and identifies population-specific outlier individuals. The package can be accessed on...

  https://rpubs.com/Devashish13/PCAGenomics
• • LEGE@lege

  

  LEGE created a new bio-script Fasta to Fastq conversion ! 282 days ago
• • BioStar@biostar

  

  BioStar bookmarked bacLIFE: an automated genome mining tool for identification of lifestyle associated genes 285 days ago

  bacLIFE is a streamlined computational workflow that annotates bacterial genomes and performs large-scale comparative genomics to predict bacterial lifestyles and to pinpoint candidate genes, denominated lifestyle-associated genes (LAGs), and...

  https://github.com/Carrion-lab/bacLIFE
• • Abhi@abhinav

  

  Abhi bookmarked UniAligner: a parameter-free framework for fast sequence alignment 292 days ago

  UniAligner (formerly, TandemAligner) is the first parameter-free algorithm for sequence alignment that introduces a sequence-dependent alignment scoring that automatically changes for any pair of compared sequences. Classical alignment approaches,...

  https://github.com/seryrzu/unialigner
• • LEGE@lege

  

  LEGE bookmarked doubletrouble: identify duplicated genes from whole-genome protein sequences and classify 296 days ago

  doubletrouble aims to identify duplicated genes from whole-genome protein sequences and classify them based on their modes of duplication. The duplication modes are i. segmental duplication (SD); ii. tandem duplication (TD); iii. proximal...

  https://bioconductor.org/packages/release/bioc/html/doubletrouble.html
• • LEGE@lege

  

  LEGE bookmarked OMArk: software for proteome (protein-coding gene repertoire) quality assessment 308 days ago

  OMArk is a software for proteome (protein-coding gene repertoire) quality assessment. It provides measures of proteome completeness, characterizes the consistency of all protein coding genes with regard to their homologs, and identifies the presence...

  https://github.com/DessimozLab/OMArk
• • LEGE@lege

  

  LEGE bookmarked CLAW: Chloroplast Long-read Assembly Workflow 308 days ago

  CLAW (Chloroplast Long-read Assembly Workflow) is an mostly-automated Snakemake-based workflow for the assembly of chloroplast genomes. CLAW uses chloroplast long-reads, which are baited out of larger read libraries (e.g., an Oxford Nanopore...

  https://github.com/aaronphillips7493/CLAW
• • LEGE@lege

  

  LEGE bookmarked pipesnake: bioinformatics best-practice analysis pipeline for phylogenomic reconstruction 308 days ago

  ausarg/pipesnake is a bioinformatics best-practice analysis pipeline for phylogenomic reconstruction starting from short-read 'second-generation' sequencing data. The pipeline is built using Nextflow, a workflow tool to run tasks across...

  https://github.com/AusARG/pipesnake
• • LEGE@lege

  

  LEGE bookmarked PhyloHerb: Phylogenomic Analysis Pipeline for Herbarium Specimens 308 days ago

  What is PhyloHerb: PhyloHerb is a wrapper program to process genome skimming data collected from plant materials. The outcomes include the plastid genome (plastome) assemblies, mitochondrial genome assemblies, nuclear ribosomal DNAs...

  https://github.com/lmcai/PhyloHerb/
• • LEGE@lege

  

  LEGE bookmarked Orthoflow: workflow for phylogenetic inference of genome-scale datasets of protein-coding genes 308 days ago

  Orthoflow is a workflow for phylogenetic inference of genome-scale datasets of protein-coding genes. Our goal was to make it straightforward to work from a combination of input sources including annotated contigs in Genbank format and FASTA files...

  https://github.com/rbturnbull/orthoflow
• • LEGE@lege

  

  LEGE posted to the wire 309 days ago

  Walk-in Bioinformatics interview @ https://cdri.res.in/pdf/recruitment/Advt_01_2024_Project_Staff.pdf
• • Jitendra Narayan@admin

  

  Jitendra Narayan posted to the wire 313 days ago

  MultiQC: A fresh coat of paint https://seqera.io/blog/multiqc-plotly/ #MultiQC #Updates
• • LEGE@lege

  

  LEGE created a new bio-script Python script for basic stats of the assembled genome ! 328 days ago
• • LEGE@lege

  

  LEGE created a new bio-script Perl script to calculate the basic stats of the assembled genome ! 328 days ago
• • LEGE@lege

  

  LEGE created a new bio-script Perl script to parse blast results and plot basic stats ! 328 days ago
• • LEGE@lege

  

  LEGE created a new bio-script Perl script to parse VCF file ! 328 days ago
• • LEGE@lege

  

  LEGE created a new bio-script Perl script to find overlaps between two bed files ! 328 days ago

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