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• • Rahul Nayak@rahul

  

  Rahul Nayak created a page Python Numeric Variables and Types ! 3043 days ago

  Python is completely object oriented, and not "statically typed". You do not need to declare variables before using them, or declare their type. Every variable in Python is an object. To define an integer, use the following syntax in...
• • Rahul Nayak@rahul

  

  Rahul Nayak created a page Hello Python World ! 3043 days ago

  As I mentioned earlier, I will keep on posting one Python script per day to introduce you to Python programming. Whether you are an experienced programmer or not, this tutorial is intended for everyone who wishes to learn the Python programming...
• • Rahul Nayak@rahul

  

  Rahul Nayak created a page Learning Python Programming - a bioinformatician perspective ! 3043 days ago

  Python Programming is a general purpose programming language that is open source, flexible, powerful and easy to use. One of the most important features of python is its rich set of utilities and libraries for data processing and analytics...

  Comments

  • • biogeek@biogeek

    

    biogeek 2293 days ago

    Python for Biologist http://userpages.fu-berlin.de/digga/p4b.pdf
• • Jit@jit.aber

  

  Jit created a new bio-script Bash script to convert SAM to BAM visualization ready 3043 days ago
• • Jit@jit.aber

  

  Jit bookmarked GAPPadder: A Sensitive Approach for Closing Gaps on Draft Genomes with Short Sequence Reads 3043 days ago

  This software is provided ``as is” without warranty of any kind. In no event shall the author be held responsible for any damage resulting from the use of this software. The program package, including source codes, executables, and this...

  https://github.com/Reedwarbler/GAPPadder
• • Jit@jit.aber

  

  Jit bookmarked fragScaff: Genome Assembly with Contiguity Preserving Transposition 3044 days ago

  Contiguity preserving transposition and sequencing (CPT-seq) is an entirely in vitro means of generating libraries comprised of 9216 indexed pools, each of which contains thousands of sparsely sequenced long fragments ranging from 5 kilobases to...

  https://sourceforge.net/projects/fragscaff/files/
• • Jit@jit.aber

  

  Jit bookmarked LACHESIS: Genome Assembly with Hi-C-based Contact Probability Maps (LACHESIS) 3044 days ago

  LACHESIS is method that exploits contact probability map data (e.g. from Hi-C) for chromosome-scale de novo genome assembly. Further information about LACHESIS, including source code, documentation and a user's guide are available...

  http://shendurelab.github.io/LACHESIS/
• • Jit@jit.aber

  

  Jit bookmarked Digest: In silico restriction digest of complete genomes 3044 days ago

  This tool allows to retrieve number of cleavages yielded by commercially available endonucleases in up-to-date sequenced prokaryotic genomes. When the number of fragments is bellow 50, Pulse Field gel Electrophoresis (PFGE) is simulated. A tool for...

  http://insilico.ehu.es/digest/
• • Rahul Agarwal@raag

  

  Rahul Agarwal posted to the wire 3045 days ago

  https://scrapy.org/ #extract #data #from #websites #webscraping
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary published a news post Custom R charts coming to Excel ! in the group R and Bioconductor 3045 days ago

  Microsoft announced that Power BI custom visuals will soon be available as charts with Excel.
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary bookmarked EuGI: a novel resource for studying genomic islands to facilitate horizontal gene transfer... 3045 days ago

  SWGIS v2.0 along with the EuGI database, which houses GIs identified in 66 different eukaryotic species, and the EuGI web-resource, provide the first comprehensive resource for studying HGT in...

  https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-018-4724-8
• • Manisha Mishra@manisha

  

  Manisha Mishra posted to the wire 3045 days ago

  Bioinformatics Faculty Jobs at MAHARSHI DAYANAND UNIVERSITY, ROHTAK http://www.mdurohtak.ac.in/pdf18/Advt/ADvertisement%2028%20of%202018.pdf #MDU #ROHTAK
• • Shruti Paniwala@shruti

  

  Shruti Paniwala posted to the wire 3045 days ago

  Bioinformatic jobs at TATA MEMORIAL CENTRE ADVANCED CENTRE FOR TREATMENT, RESEARCH AND EDUCATION IN CANCER (ACTREC) http://www.actrec.gov.in/data%20files/Vacancies/2018/ACTREC-Advt-A-1-(COR)-2018.pdf
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked MECAT: fast mapping, error correction, and de novo assembly for single-molecule sequencing reads 3046 days ago

  MECAT is an ultra-fast Mapping, Error Correction and de novo Assembly Tools for single molecula sequencing (SMRT) reads. MECAT employs novel alignment and error correction algorithms that are much more efficient than the state of art of aligners and...

  https://github.com/xiaochuanle/MECAT
• • Jit@jit.aber

  

  Jit commented on the blog How to install Perl modules on Mac OS X in easy steps !! 3049 days ago

  Our Perl script for drawing requires the GD module(2.41 or later version). Moreover, the GD module requires the following packages. The gd graphics library The PNG graphics libraryThe zlib compression library
• • Jit@jit.aber

  

  Jit published a blog post Installing Bandage on Ubunty ! 3049 days ago

  instructions successfully build Bandage on a fresh installation of Ubuntu 14.04
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked MIX: Combining multiple assemblies from NGS data 3050 days ago

  Mix is a tool that combines two or more draft assemblies, without relying on a reference genome and has the goal to reduce contig fragmentation and thus speed-up genome finishing. The proposed algorithm builds an extension graph where vertices...

  https://github.com/cbib/MIX
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked Metassembler: merging and optimizing de novo genome assemblies 3050 days ago

  Metassembler combines multiple whole genome de novo assemblies into a combined consensus assembly using the best segments of the individual assemblies. Genome assembly projects typically run multiple algorithms in an attempt to find the single best...

  https://sourceforge.net/projects/metassembler/?source=directory
• • Rahul Nayak@rahul

  

  Rahul Nayak bookmarked EvidentialGene: tr2aacds, mRNA Transcript Assembly Software 3050 days ago

  EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University,...

  http://arthropods.eugenes.org/EvidentialGene/trassembly.html

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