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With sudden exposion of big data in life sciences , now there are many companies want to exploit these data in any form or any application related to daily life which affect us in some way.
This group can be used to enlist all the companies or...
You can try BBmap / randomreads.sh
./randomreads.sh []
Written by Brian BushnellLast modified May 26, 2015
Description: Generates random synthetic reads from a reference genome. Read names indicate their genomic origin.Allows precise...
proovread : large-scale high-accuracy PacBio correction through iterative short read consensus
outperforms PacBioToCA/LSC in terms of accuracy and contiguity/sensitivity (http://dx.doi.org/10.1093/bioinformatics/btu392)
is easy to...
LRCstats is an open-source pipeline for benchmarking DNA long read correction algorithms for long reads outputted by third generation sequencing technology such as machines produced by Pacific Biosciences. The reads produced by third generation...
Long Read Correction and other Correction tools
This package is a loose collection of scripts. To run the correctionroutine see the section below. Descriptions of the other scriptsare at the bottom of this file.
Contact: gurtowsk@cshl.edu
In...
Jabba is a hybrid error correction tool to correct third generation (PacBio / ONT) sequencing data, using second generation (Illumina) data.
Input
Jabba takes as input a concatenated de Bruijn graph and a set of sequences:
the de Bruijn graph...