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• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary created a new bio-script Perl script for Smith-Waterman Algorithm 1151 days ago
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary created a new bio-script Oneliner to convert lower-case to sequence masked with Ns 1151 days ago
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary published a blog post Levenshtein and Damerau-Levenshtein distance ! 1151 days ago

  Also known as Edit Distance
• • Neel@neelam

  

  Neel commented on a bookmark Genome assembly training tutorial at Galaxy ! 1154 days ago

  Understandinng genome assembly processes https://academic.oup.com/bfg/article/15/1/1/1741842
• • Neel@neelam

  

  Neel bookmarked WAAFLE: a Workflow to Annotate Assemblies and Find LGT Events. 1155 days ago

  Lateral gene transfer (LGT) is an important mechanism for genome diversification in microbial communities, including the human microbiome. While methods exist to identify LGTs from sequenced isolate genomes, identifying LGTs from community...

  http://huttenhower.sph.harvard.edu/waafle
• • Neel@neelam

  

  Neel created a new bio-script Trim the reads in loop using Trimmomatic ! 1155 days ago
• • Neel@neelam

  

  Neel created a new bio-script Commands to Remove White Space In Text Or String Using Awk And Sed In Linux 1157 days ago
• • Neel@neelam

  

  Neel posted to the wire 1158 days ago

  Phylogenetic tree construction http://math.ucdenver.edu/~billups/courses/ma5610/lectures/lec13_christiaan_large.pdf #Tree #Phylogeny
• • LEGE@lege

  

  LEGE bookmarked Getting Started with Nextflow 1161 days ago

  Introduction to Bioinformatics workflows with Nextflow and nf-core Getting Started with Nextflow Objectives Understand What a workflow management system is. Understand the benefits of using a workflow management system. Explain the benefits of...

  https://carpentries-incubator.github.io/workflows-nextflow/aio/index.html
• • LEGE@lege

  

  LEGE commented on a bookmark Far Manager Commands and Links ! 1162 days ago

  KeyDescription  F1 Yes! Read it first. BTW, FarEng.hlf is a simple text file, you can open it in any editor.   ShiftF1 Create new archive from selected files   ShiftF2 Extract files from selected...
• • LEGE@lege

  

  LEGE commented on a bookmark Coronavirus Resources ! 1162 days ago

  The US government SARS-CoV-2 Interagency Group (SIG) developed a Variant Classification scheme that defines three classes of SARS-CoV-2 variants: Variant of Interest Variant of Concern Variant of High Consequence Intersting...
• • LEGE@lege

  

  LEGE created a new bio-script Install Packages in Python 1162 days ago
• • LEGE@lege

  

  LEGE bookmarked LncPipe:A Nextflow-based pipeline for comprehensive analyses of long non-coding RNAs from RNA-seq... 1162 days ago

  The pipeline was developed based on a popular workflow framework Nextflow, composed of four core procedures including reads alignment, assembly, identification and quantification. It contains various unique features such as well-designed...

  https://github.com/likelet/LncPipe
• • LEGE@lege

  

  LEGE commented on a bookmark Coronavirus Resources ! 1162 days ago

  Illumina toolkit for SARS-CoV2  https://sapac.illumina.com/informatics/biological-interpretation/coronavirus-software.html#about
• • LEGE@lege

  

  LEGE created a new bio-script Run multiple bash command in screen ! 1162 days ago

  Comments

  • • Rahul Nayak@rahul

    

    Rahul Nayak 1038 days ago

    srun --partition=compute --nodes=1 --ntasks-per-node=40 --pty bash
• • LEGE@lege

  

  LEGE posted to the wire 1163 days ago

  Minimizer-space de Bruijn graphs: Whole-genome assembly of long reads in minutes on a personal computer https://www.cell.com/cell-systems/fulltext/S2405-4712(21)00332-X #msDBG #Assembly #Genome
• • LEGE@lege

  

  LEGE commented on a bookmark HISAT2 Index Files Download ! 1163 days ago

  AWS registry https://registry.opendata.aws/jhu-indexes/
• • LEGE@lege

  

  LEGE bookmarked HISAT2 Index Files Download ! 1163 days ago

  Resource for downloading all the HISAT2 related files  Please cite: Kim, D., Paggi, J.M., Park, C. et al. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol 37, 907–915...

  http://daehwankimlab.github.io/hisat2/download/#h-sapiens

  Comments

  • • LEGE@lege

    

    LEGE 1163 days ago

    AWS registry

    https://registry.opendata.aws/jhu-indexes/
• • LEGE@lege

  

  LEGE bookmarked Reference Sequence Resource! 1163 days ago

  The ENCODE project uses Reference Genomes from NCBI or UCSC to provide a consistent framework for mapping high-throughput sequencing data. In general, ENCODE data are mapped consistently to 2 human (GRCH38, hg19) and 2 mouse...

  https://www.encodeproject.org/data-standards/reference-sequences/
• • LEGE@lege

  

  LEGE created a new bio-script Install Nexflow on Linux ! 1163 days ago

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