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- LEGE@lege
LEGE posted to the wire 1163 days ago

Bioinformatics Hackathon Africa https://dataleadafrica.com/programs/ #Africa #Hackthon
- LEGE@lege
LEGE bookmarked A guide to machine learning for biologists 1163 days ago

We aim to provide readers with a gentle introduction to a few key machine learning techniques, including the most recently developed and widely used techniques involving deep neural networks. We describe how different techniques may be suited to...

https://www.nature.com/articles/s41580-021-00407-0
- Jit@jit.aber
Jit posted to the wire 1166 days ago

#CoViD #miner #tools https://translational-medicine.biomedcentral.com/articles/10.1186/s12967-020-02675-4
- Jit@jit.aber
Jit bookmarked RagTag: a collection of software tools for scaffolding and improving modern genome assemblies 1168 days ago

RagTag is a collection of software tools for scaffolding and improving modern genome assemblies. Tasks include: Homology-based misassembly correction Homology-based assembly scaffolding and patching Scaffold merging

https://github.com/malonge/RagTag
- Jit@jit.aber
Jit bookmarked Machine Learning for Genomics 1169 days ago

Module 1: Statistics for genomics (2-8 August 2021) A simple intro to statistical distributions hypothesis testing linear...

https://github.com/BIMSBbioinfo/compgen2021
- Jit@jit.aber
Jit answered the question Rasflow Error: Directory cannot be locked 1173 days ago

You can also just remove .snakemake/locks/* OR Try snakemake --unlock
- Neel@neelam
Neel asked Rasflow Error: Directory cannot be locked 1173 days ago

Error: Directory cannot be locked. Please make sure that no other Snakemake process is trying to create the same files in the following directory:/home/RASflowIf you are sure that no other instances of snakemake are running on this directory, the...
- Jit@jit.aber
Jit commented on the bio-script Basic docker commands ! 1173 days ago

Start the docker container docker start [options] container_id Stop the docker container docker stop --time=20 container_id Kill a docker container docker kill [option] container_id
- Jit@jit.aber
Jit commented on the bio-script Basic docker commands ! 1173 days ago

Attached the running docker Instead of using -i or -t options, use the attach command to connect to a running container: docker attach container_id
- Jit@jit.aber
Jit bookmarked JUDI: Just Do It 1173 days ago

judi comes from the idea of bringing the power and efficiency of doit to execute any kind of task under many combinations of parameter settings. https://github.com/ncbi/JUDI

https://github.com/ncbi/JUDI
- LEGE@lege
LEGE created a new bio-script Tadpole is 250x faster than SPADes assembler ! 1177 days ago
- LEGE@lege
LEGE created a new bio-script Remove dupcates in multifasta file ! 1177 days ago
- LEGE@lege
LEGE posted to the wire 1177 days ago

Count number of fasta sequence $ awk '/^>/ { f = !a[$0]++ } f' aaaa.fa > bbbb.fa #count #fasta #oneliner
- LEGE@lege
LEGE posted to the wire 1177 days ago

Snakemake pipeline https://git.scicore.unibas.ch/zavolan_public/A-seq2-processing #A-Seq2 #Snakemake
- LEGE@lege
LEGE created a new bio-script Python script to read FASTA and FASTQ file ! 1177 days ago
- Jit@jit.aber
Jit posted to the wire 1178 days ago

#NLP-MeTaxa: A Natural Language Processing Approach for #Metagenomic #Taxonomic #Binning Based on Deep Learning https://github.com/padriba/NLP_MeTaxa/
- Jit@jit.aber
Jit posted a new ad in the Opportunity Nigerian Bioinformatics and Genomics Network (NBGN) 1179 days ago
- Neel@neelam
Neel created a new bio-script Print in terminal with python ! 1179 days ago
- Jit@jit.aber
Jit posted to the wire 1179 days ago

Understanding Covid variant https://sangerinstitute.blog/2021/06/29/covid-connections-variant-or-villain/ #Covid #Variant #Disease #SARS-Cov2
- Neel@neelam
Neel commented on the bio-script Estimate Genome Size with Jellyfish and R 1182 days ago

Jellyfish manual at http://www.genome.umd.edu/docs/JellyfishUserGuide.pdf

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