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• • Neel@neelam

  

  Neel created a new bio-script Install Jellyfish on Linux ! 1182 days ago
• • Jit@jit.aber

  

  Jit posted to the wire 1182 days ago

  #Ten simple #rules for organizing a #bioinformatics #training #course in low- and #middle-income countries https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1009218
• • Jit@jit.aber

  

  Jit posted a new ad in the Opportunity Postdoc position at Kiel University, Germany 1182 days ago
• • Surabhi Chaudhary@surabhi

  

  Surabhi Chaudhary created a new bio-script List of string comparison algorithms ! 1183 days ago
• • Neel@neelam

  

  Neel posted to the wire 1183 days ago

  Bioinformatics summit at Delhi, India https://webs.iiitd.edu.in/hitsummit/ #Free #Summit #HIT #Health
• • Neel@neelam

  

  Neel bookmarked biostarhandbook 1183 days ago

  Nice book collection for bioinformatician ... highly recommended.

  https://www.biostarhandbook.com/
• • Neel@neelam

  

  Neel bookmarked Applying MinHash to cluster RNAseq samples 1184 days ago

  A kmer blog worth spending time on

  http://ivory.idyll.org/blog/2016-sourmash.html
• • Neel@neelam

  

  Neel bookmarked k-mers tutorial - classification and taxonomy 1184 days ago

  DNA k-mers underlie much of our assembly work, and we (along with many others!) have spent a lot of time thinking about how to store k-mer graphs efficiently, discard redundant data, and count them efficiently. More recently, we've...

  http://ivory.idyll.org/blog/2017-something-about-kmers.html
• • Neel@neelam

  

  Neel posted to the wire 1184 days ago

  #RepExpress: A Novel #Pipeline for the Quantification and Characterization of #Transposable #Element #Expression from RNA-seq Data https://pubmed.ncbi.nlm.nih.gov/34387946/
• • Jit@jit.aber

  

  Jit bookmarked Genome Assembly Workshop 2020 1185 days ago

  Our team offers custom bioinformatics services to academic and private organizations. We have a strong academic background with a focus on cutting edge, open source software. We replicate standard analysis pipelines (best practices) when...

  https://ucdavis-bioinformatics-training.github.io/2020-Genome_Assembly_Workshop/snakemake/snakemake_intro
• • Jit@jit.aber

  

  Jit created a new bio-script Commands to transfer files and folder in docker ! 1186 days ago
• • Jit@jit.aber

  

  Jit answered the question How to get the container id ? 1186 days ago

  sudo docker container ls --all will list all container in ur system.
• • BioStar@biostar

  

  BioStar asked How to get the container id ? 1186 days ago
• • BioStar@biostar

  

  BioStar bookmarked RNA-Seq differential expression work flow using DESeq2 1187 days ago

  One of the aim of RNAseq data analysis is the detection of differentially expressed genes. The package DESeq2 provides methods to test for differential expression analysis.

  http://www.sthda.com/english/wiki/rna-seq-differential-expression-work-flow-using-deseq2
• • BioStar@biostar

  

  BioStar posted to the wire 1187 days ago

  RNA seq tutorial https://github.com/griffithlab/rnaseq_tutorial #Tutorial #RNA_seq
• • Jit@jit.aber

  

  Jit posted to the wire 1188 days ago

  Whole genome alignment https://pdfs.semanticscholar.org/f64b/68973f1e836e1fcf697de709c3ffb1225ce5.pdf #Whole #Genome #Alignment #PPT
• • Jit@jit.aber

  

  Jit posted to the wire 1188 days ago

  Evolutionary evidence of chromosomal rearrangements through SNAP https://www.diva-portal.org/smash/get/diva2:1580925/FULLTEXT01.pdf #Bioinformatics #Computational
• • Jit@jit.aber

  

  Jit posted to the wire 1188 days ago

  https://www.sciencemag.org/news/2021/08/new-sars-cov-2-variants-have-changed-pandemic-what-will-virus-do-next? #Pandemic #Variants
• • Jit@jit.aber

  

  Jit posted to the wire 1190 days ago

  #Convert #FASTQ to FASTA and set bases of #quality lower than 20 to N $ seqtk seq -aQ64 -q20 -n N IN.fastq > OUT.fasta
• • Jit@jit.aber

  

  Jit created a new bio-script Commandline for paired end reads simulation with BBMap ! 1191 days ago

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